About lab
Burghaus2011 Simulating Rivaroxaban Effects On Blood Coagulation
This Biosimulant lab wraps Burghaus2011 Simulating Rivaroxaban Effects On Blood Coagulation as a runnable systems biology model with a companion visualization module.
Systems Biology Burghaus2011Simulating Rivaroxaban Effects On BModel1805140001Model represents core biological mechanisms from biomodels_ebi reference biomodels_ebi:MODEL1805140001. It can be used to explore the configured dynamics and compare scenario outcomes across configurations.
What You'll See
The lab asks: Which drug, dose, or target-linked model states drive the simulated profile? Source model: Burghaus2011 - Simulating Rivaroxaban effects on blood coagulation. It runs for 1.0 time units with a communication step of 0.1. The run uses the model defaults declared by the curated SBML wrapper. The generated visualizations focus on alpha1AT, a2MG, APC_a2AP, vWF, mIIa_alpha1AT, and mIIa_a2MG, combining trajectory, endpoint-comparison, and summary-table views from one completed dark-mode run.
In this captured run, vWF moved from 3.5e-08 to 3.5e-08 across 1.0 simulation windows.
Output Visualizations

Summary table for Burghaus2011 Simulating Rivaroxaban Effects On Blood Coagulation, reporting the scientific question, observed answer, dominant module, and caveat.

Trajectories of vWF, alpha1AT, a2MG, mIIa_alpha1AT, mIIa_a2MG, and APC_a2AP across the 1.0 simulation. In this run vWF fell from 3.5e-08 to 3.5e-08 — the largest movements among the focused observables.

Largest-excursion ranking of the focused observables — the absolute movement magnitude during the run. Top 3: vWF = 1.4e-11, alpha1AT = 5.05e-15, a2MG = 2.04e-15, with 2 more observables below.

Trajectories of vWF, alpha1AT, a2MG, mIIa_alpha1AT, mIIa_a2MG, and APC_a2AP across the 1.0 simulation. In this run vWF fell from 3.5e-08 to 3.5e-08 — the largest movements among the focused observables.

Visualization card from the Burghaus2011 Simulating Rivaroxaban Effects On Blood Coagulation dark-mode run.
Model Context
- Core model:
models/core - Visualization model:
models/visualisation - Standard:
other - Upstream source:
biomodels_ebi:MODEL1805140001 - License:
CC0
Inputs
| Input | Maps To | Default | Notes |
|---|---|---|---|
| Initial Alpha1 At | systemsbiology_sbml_burghaus2011_simulating_rivaroxaban_effects_on_b_model1805140001_model.initial_alpha1_at | Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol alpha1AT. | |
| Initial A2 Mg | systemsbiology_sbml_burghaus2011_simulating_rivaroxaban_effects_on_b_model1805140001_model.initial_a2_mg | Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol a2MG. | |
| Initial Apc A2 Ap | systemsbiology_sbml_burghaus2011_simulating_rivaroxaban_effects_on_b_model1805140001_model.initial_apc_a2_ap | Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol APC_a2AP. | |
| Initial V Wf | systemsbiology_sbml_burghaus2011_simulating_rivaroxaban_effects_on_b_model1805140001_model.initial_v_wf | Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol vWF. | |
| Initial M I Ia Alpha1 At | systemsbiology_sbml_burghaus2011_simulating_rivaroxaban_effects_on_b_model1805140001_model.initial_m_i_ia_alpha1_at | Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol mIIa_alpha1AT. | |
| Initial M I Ia A2 Mg | systemsbiology_sbml_burghaus2011_simulating_rivaroxaban_effects_on_b_model1805140001_model.initial_m_i_ia_a2_mg | Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol mIIa_a2MG. |
Outputs
| Output | Maps To | Role |
|---|---|---|
state | systemsbiology_sbml_burghaus2011_simulating_rivaroxaban_effects_on_b_model1805140001_model.state | Available to the visualization model and downstream workflows. |
summary | systemsbiology_sbml_burghaus2011_simulating_rivaroxaban_effects_on_b_model1805140001_model.summary | Available to the visualization model and downstream workflows. |
species_labels | systemsbiology_sbml_burghaus2011_simulating_rivaroxaban_effects_on_b_model1805140001_model.species_labels | Available to the visualization model and downstream workflows. |
alpha1_at | systemsbiology_sbml_burghaus2011_simulating_rivaroxaban_effects_on_b_model1805140001_model.alpha1_at | Available to the visualization model and downstream workflows. |
a2_mg | systemsbiology_sbml_burghaus2011_simulating_rivaroxaban_effects_on_b_model1805140001_model.a2_mg | Available to the visualization model and downstream workflows. |
apc_a2_ap | systemsbiology_sbml_burghaus2011_simulating_rivaroxaban_effects_on_b_model1805140001_model.apc_a2_ap | Available to the visualization model and downstream workflows. |
v_wf | systemsbiology_sbml_burghaus2011_simulating_rivaroxaban_effects_on_b_model1805140001_model.v_wf | Available to the visualization model and downstream workflows. |
m_i_ia_alpha1_at | systemsbiology_sbml_burghaus2011_simulating_rivaroxaban_effects_on_b_model1805140001_model.m_i_ia_alpha1_at | Available to the visualization model and downstream workflows. |
m_i_ia_a2_mg | systemsbiology_sbml_burghaus2011_simulating_rivaroxaban_effects_on_b_model1805140001_model.m_i_ia_a2_mg | Available to the visualization model and downstream workflows. |
Runtime
- Duration:
1.0 - Communication step:
0.1
Running Locally
biosimulant labs serve
Systems Biology Burghaus2011Simulating Rivaroxaban Effects On BModel1805140001Model represents core biological mechanisms from biomodels_ebi reference biomodels_ebi:MODEL1805140001. When you run it, you can inspect state and compare temporal behavior between baseline and adjusted inputs.
Runtime
Runs
Metadata
Manifest
{
"io": {
"inputs": [
{
"name": "initial_alpha1_at",
"label": "Initial Alpha1 At",
"maps_to": "systemsbiology_sbml_burghaus2011_simulating_rivaroxaban_effects_on_b_model1805140001_model.initial_alpha1_at",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `alpha1AT`."
},
{
"name": "initial_a2_mg",
"label": "Initial A2 Mg",
"maps_to": "systemsbiology_sbml_burghaus2011_simulating_rivaroxaban_effects_on_b_model1805140001_model.initial_a2_mg",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `a2MG`."
},
{
"name": "initial_apc_a2_ap",
"label": "Initial Apc A2 Ap",
"maps_to": "systemsbiology_sbml_burghaus2011_simulating_rivaroxaban_effects_on_b_model1805140001_model.initial_apc_a2_ap",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `APC_a2AP`."
},
{
"name": "initial_v_wf",
"label": "Initial V Wf",
"maps_to": "systemsbiology_sbml_burghaus2011_simulating_rivaroxaban_effects_on_b_model1805140001_model.initial_v_wf",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `vWF`."
},
{
"name": "initial_m_i_ia_alpha1_at",
"label": "Initial M I Ia Alpha1 At",
"maps_to": "systemsbiology_sbml_burghaus2011_simulating_rivaroxaban_effects_on_b_model1805140001_model.initial_m_i_ia_alpha1_at",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `mIIa_alpha1AT`."
},
{
"name": "initial_m_i_ia_a2_mg",
"label": "Initial M I Ia A2 Mg",
"maps_to": "systemsbiology_sbml_burghaus2011_simulating_rivaroxaban_effects_on_b_model1805140001_model.initial_m_i_ia_a2_mg",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `mIIa_a2MG`."
}
],
"outputs": [
{
"name": "state",
"maps_to": "systemsbiology_sbml_burghaus2011_simulating_rivaroxaban_effects_on_b_model1805140001_model.state"
},
{
"name": "summary",
"maps_to": "systemsbiology_sbml_burghaus2011_simulating_rivaroxaban_effects_on_b_model1805140001_model.summary"
},
{
"name": "species_labels",
"maps_to": "systemsbiology_sbml_burghaus2011_simulating_rivaroxaban_effects_on_b_model1805140001_model.species_labels"
},
{
"name": "alpha1_at",
"maps_to": "systemsbiology_sbml_burghaus2011_simulating_rivaroxaban_effects_on_b_model1805140001_model.alpha1_at"
},
{
"name": "a2_mg",
"maps_to": "systemsbiology_sbml_burghaus2011_simulating_rivaroxaban_effects_on_b_model1805140001_model.a2_mg"
},
{
"name": "apc_a2_ap",
"maps_to": "systemsbiology_sbml_burghaus2011_simulating_rivaroxaban_effects_on_b_model1805140001_model.apc_a2_ap"
},
{
"name": "v_wf",
"maps_to": "systemsbiology_sbml_burghaus2011_simulating_rivaroxaban_effects_on_b_model1805140001_model.v_wf"
},
{
"name": "m_i_ia_alpha1_at",
"maps_to": "systemsbiology_sbml_burghaus2011_simulating_rivaroxaban_effects_on_b_model1805140001_model.m_i_ia_alpha1_at"
},
{
"name": "m_i_ia_a2_mg",
"maps_to": "systemsbiology_sbml_burghaus2011_simulating_rivaroxaban_effects_on_b_model1805140001_model.m_i_ia_a2_mg"
}
]
},
"tags": [
"pharmacology",
"systemsbiology",
"sbml",
"biomodels_ebi",
"faithful",
"curated"
],
"title": "Burghaus2011 Simulating Rivaroxaban Effects On Blood Coagulation Lab",
"models": [
{
"path": "owned/models/systemsbiology_sbml_burghaus2011_simulating_rivaroxaban_effects_on_b_model1805140001_model",
"alias": "systemsbiology_sbml_burghaus2011_simulating_rivaroxaban_effects_on_b_model1805140001_model",
"provenance": {
"owned_path": "owned/models/systemsbiology_sbml_burghaus2011_simulating_rivaroxaban_effects_on_b_model1805140001_model"
}
},
{
"path": "owned/models/visualisation",
"alias": "visualisation",
"provenance": {
"owned_path": "owned/models/visualisation"
}
}
],
"wiring": [
{
"to": [
"visualisation.systemsbiology_sbml_burghaus2011_simulating_rivaroxaban_effects_on_b_model1805140001_model_state"
],
"from": "systemsbiology_sbml_burghaus2011_simulating_rivaroxaban_effects_on_b_model1805140001_model.state"
},
{
"to": [
"visualisation.systemsbiology_sbml_burghaus2011_simulating_rivaroxaban_effects_on_b_model1805140001_model_summary"
],
"from": "systemsbiology_sbml_burghaus2011_simulating_rivaroxaban_effects_on_b_model1805140001_model.summary"
},
{
"to": [
"visualisation.systemsbiology_sbml_burghaus2011_simulating_rivaroxaban_effects_on_b_model1805140001_model_species_labels"
],
"from": "systemsbiology_sbml_burghaus2011_simulating_rivaroxaban_effects_on_b_model1805140001_model.species_labels"
}
],
"runtime": {
"duration": 1,
"initial_inputs": {},
"communication_step": 0.1
},
"description": "Systems Biology Burghaus2011Simulating Rivaroxaban Effects On BModel1805140001Model represents core biological mechanisms from biomodels_ebi reference biomodels_ebi:MODEL1805140001. When you run it, you can inspect state and compare temporal behavior between baseline and adjusted inputs.",
"schema_version": "2.0"
}Sign in to start your own run. Public-lab history stays visible here.
Select a run from History to view its results.