BiosimulantBiosimulant
Docs
Search labs...
Sign inGet Started

Burghaus2011 Simulating Rivaroxaban Effects On Blood Coagulation Lab

About lab

Burghaus2011 Simulating Rivaroxaban Effects On Blood Coagulation

This Biosimulant lab wraps Burghaus2011 Simulating Rivaroxaban Effects On Blood Coagulation as a runnable systems biology model with a companion visualization module. Systems Biology Burghaus2011Simulating Rivaroxaban Effects On BModel1805140001Model represents core biological mechanisms from biomodels_ebi reference biomodels_ebi:MODEL1805140001. It can be used to explore the configured dynamics and compare scenario outcomes across configurations.

What You'll See

The lab asks: Which drug, dose, or target-linked model states drive the simulated profile? Source model: Burghaus2011 - Simulating Rivaroxaban effects on blood coagulation. It runs for 1.0 time units with a communication step of 0.1. The run uses the model defaults declared by the curated SBML wrapper. The generated visualizations focus on alpha1AT, a2MG, APC_a2AP, vWF, mIIa_alpha1AT, and mIIa_a2MG, combining trajectory, endpoint-comparison, and summary-table views from one completed dark-mode run.

In this captured run, vWF moved from 3.5e-08 to 3.5e-08 across 1.0 simulation windows.

Output Visualizations

Burghaus2011 Simulating Rivaroxaban Effects On Blood Coagulation - run interpretation

Summary table for Burghaus2011 Simulating Rivaroxaban Effects On Blood Coagulation, reporting the scientific question, observed answer, dominant module, and caveat.

Burghaus2011 Simulating Rivaroxaban Effects On Blood Coagulation - timeseries visualization

Trajectories of vWF, alpha1AT, a2MG, mIIa_alpha1AT, mIIa_a2MG, and APC_a2AP across the 1.0 simulation. In this run vWF fell from 3.5e-08 to 3.5e-08 — the largest movements among the focused observables.

Burghaus2011 Simulating Rivaroxaban Effects On Blood Coagulation - excursions bar

Largest-excursion ranking of the focused observables — the absolute movement magnitude during the run. Top 3: vWF = 1.4e-11, alpha1AT = 5.05e-15, a2MG = 2.04e-15, with 2 more observables below.

Burghaus2011 Simulating Rivaroxaban Effects On Blood Coagulation - timeseries visualization

Trajectories of vWF, alpha1AT, a2MG, mIIa_alpha1AT, mIIa_a2MG, and APC_a2AP across the 1.0 simulation. In this run vWF fell from 3.5e-08 to 3.5e-08 — the largest movements among the focused observables.

Burghaus2011 Simulating Rivaroxaban Effects On Blood Coagulation - visualization

Visualization card from the Burghaus2011 Simulating Rivaroxaban Effects On Blood Coagulation dark-mode run.

Model Context

  • Core model: models/core
  • Visualization model: models/visualisation
  • Standard: other
  • Upstream source: biomodels_ebi:MODEL1805140001
  • License: CC0

Inputs

InputMaps ToDefaultNotes
Initial Alpha1 Atsystemsbiology_sbml_burghaus2011_simulating_rivaroxaban_effects_on_b_model1805140001_model.initial_alpha1_atSource state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol alpha1AT.
Initial A2 Mgsystemsbiology_sbml_burghaus2011_simulating_rivaroxaban_effects_on_b_model1805140001_model.initial_a2_mgSource state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol a2MG.
Initial Apc A2 Apsystemsbiology_sbml_burghaus2011_simulating_rivaroxaban_effects_on_b_model1805140001_model.initial_apc_a2_apSource state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol APC_a2AP.
Initial V Wfsystemsbiology_sbml_burghaus2011_simulating_rivaroxaban_effects_on_b_model1805140001_model.initial_v_wfSource state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol vWF.
Initial M I Ia Alpha1 Atsystemsbiology_sbml_burghaus2011_simulating_rivaroxaban_effects_on_b_model1805140001_model.initial_m_i_ia_alpha1_atSource state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol mIIa_alpha1AT.
Initial M I Ia A2 Mgsystemsbiology_sbml_burghaus2011_simulating_rivaroxaban_effects_on_b_model1805140001_model.initial_m_i_ia_a2_mgSource state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol mIIa_a2MG.

Outputs

OutputMaps ToRole
statesystemsbiology_sbml_burghaus2011_simulating_rivaroxaban_effects_on_b_model1805140001_model.stateAvailable to the visualization model and downstream workflows.
summarysystemsbiology_sbml_burghaus2011_simulating_rivaroxaban_effects_on_b_model1805140001_model.summaryAvailable to the visualization model and downstream workflows.
species_labelssystemsbiology_sbml_burghaus2011_simulating_rivaroxaban_effects_on_b_model1805140001_model.species_labelsAvailable to the visualization model and downstream workflows.
alpha1_atsystemsbiology_sbml_burghaus2011_simulating_rivaroxaban_effects_on_b_model1805140001_model.alpha1_atAvailable to the visualization model and downstream workflows.
a2_mgsystemsbiology_sbml_burghaus2011_simulating_rivaroxaban_effects_on_b_model1805140001_model.a2_mgAvailable to the visualization model and downstream workflows.
apc_a2_apsystemsbiology_sbml_burghaus2011_simulating_rivaroxaban_effects_on_b_model1805140001_model.apc_a2_apAvailable to the visualization model and downstream workflows.
v_wfsystemsbiology_sbml_burghaus2011_simulating_rivaroxaban_effects_on_b_model1805140001_model.v_wfAvailable to the visualization model and downstream workflows.
m_i_ia_alpha1_atsystemsbiology_sbml_burghaus2011_simulating_rivaroxaban_effects_on_b_model1805140001_model.m_i_ia_alpha1_atAvailable to the visualization model and downstream workflows.
m_i_ia_a2_mgsystemsbiology_sbml_burghaus2011_simulating_rivaroxaban_effects_on_b_model1805140001_model.m_i_ia_a2_mgAvailable to the visualization model and downstream workflows.

Runtime

  • Duration: 1.0
  • Communication step: 0.1

Running Locally

biosimulant labs serve

Systems Biology Burghaus2011Simulating Rivaroxaban Effects On BModel1805140001Model represents core biological mechanisms from biomodels_ebi reference biomodels_ebi:MODEL1805140001. When you run it, you can inspect state and compare temporal behavior between baseline and adjusted inputs.

Runtime

Duration1
Comms Step0.1

Runs

Total0
Completed0
Failed0

Metadata

Packageburghaus2011-simulating-rivaroxaban-effects-on-blood-coagulation
Created2026-05-17
Updated2026-05-17
pharmacologysystemsbiologysbmlbiomodels_ebifaithfulcuratedvisualisation

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_alpha1_at",
        "label": "Initial Alpha1 At",
        "maps_to": "systemsbiology_sbml_burghaus2011_simulating_rivaroxaban_effects_on_b_model1805140001_model.initial_alpha1_at",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `alpha1AT`."
      },
      {
        "name": "initial_a2_mg",
        "label": "Initial A2 Mg",
        "maps_to": "systemsbiology_sbml_burghaus2011_simulating_rivaroxaban_effects_on_b_model1805140001_model.initial_a2_mg",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `a2MG`."
      },
      {
        "name": "initial_apc_a2_ap",
        "label": "Initial Apc A2 Ap",
        "maps_to": "systemsbiology_sbml_burghaus2011_simulating_rivaroxaban_effects_on_b_model1805140001_model.initial_apc_a2_ap",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `APC_a2AP`."
      },
      {
        "name": "initial_v_wf",
        "label": "Initial V Wf",
        "maps_to": "systemsbiology_sbml_burghaus2011_simulating_rivaroxaban_effects_on_b_model1805140001_model.initial_v_wf",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `vWF`."
      },
      {
        "name": "initial_m_i_ia_alpha1_at",
        "label": "Initial M I Ia Alpha1 At",
        "maps_to": "systemsbiology_sbml_burghaus2011_simulating_rivaroxaban_effects_on_b_model1805140001_model.initial_m_i_ia_alpha1_at",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `mIIa_alpha1AT`."
      },
      {
        "name": "initial_m_i_ia_a2_mg",
        "label": "Initial M I Ia A2 Mg",
        "maps_to": "systemsbiology_sbml_burghaus2011_simulating_rivaroxaban_effects_on_b_model1805140001_model.initial_m_i_ia_a2_mg",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `mIIa_a2MG`."
      }
    ],
    "outputs": [
      {
        "name": "state",
        "maps_to": "systemsbiology_sbml_burghaus2011_simulating_rivaroxaban_effects_on_b_model1805140001_model.state"
      },
      {
        "name": "summary",
        "maps_to": "systemsbiology_sbml_burghaus2011_simulating_rivaroxaban_effects_on_b_model1805140001_model.summary"
      },
      {
        "name": "species_labels",
        "maps_to": "systemsbiology_sbml_burghaus2011_simulating_rivaroxaban_effects_on_b_model1805140001_model.species_labels"
      },
      {
        "name": "alpha1_at",
        "maps_to": "systemsbiology_sbml_burghaus2011_simulating_rivaroxaban_effects_on_b_model1805140001_model.alpha1_at"
      },
      {
        "name": "a2_mg",
        "maps_to": "systemsbiology_sbml_burghaus2011_simulating_rivaroxaban_effects_on_b_model1805140001_model.a2_mg"
      },
      {
        "name": "apc_a2_ap",
        "maps_to": "systemsbiology_sbml_burghaus2011_simulating_rivaroxaban_effects_on_b_model1805140001_model.apc_a2_ap"
      },
      {
        "name": "v_wf",
        "maps_to": "systemsbiology_sbml_burghaus2011_simulating_rivaroxaban_effects_on_b_model1805140001_model.v_wf"
      },
      {
        "name": "m_i_ia_alpha1_at",
        "maps_to": "systemsbiology_sbml_burghaus2011_simulating_rivaroxaban_effects_on_b_model1805140001_model.m_i_ia_alpha1_at"
      },
      {
        "name": "m_i_ia_a2_mg",
        "maps_to": "systemsbiology_sbml_burghaus2011_simulating_rivaroxaban_effects_on_b_model1805140001_model.m_i_ia_a2_mg"
      }
    ]
  },
  "tags": [
    "pharmacology",
    "systemsbiology",
    "sbml",
    "biomodels_ebi",
    "faithful",
    "curated"
  ],
  "title": "Burghaus2011 Simulating Rivaroxaban Effects On Blood Coagulation Lab",
  "models": [
    {
      "path": "owned/models/systemsbiology_sbml_burghaus2011_simulating_rivaroxaban_effects_on_b_model1805140001_model",
      "alias": "systemsbiology_sbml_burghaus2011_simulating_rivaroxaban_effects_on_b_model1805140001_model",
      "provenance": {
        "owned_path": "owned/models/systemsbiology_sbml_burghaus2011_simulating_rivaroxaban_effects_on_b_model1805140001_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.systemsbiology_sbml_burghaus2011_simulating_rivaroxaban_effects_on_b_model1805140001_model_state"
      ],
      "from": "systemsbiology_sbml_burghaus2011_simulating_rivaroxaban_effects_on_b_model1805140001_model.state"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_burghaus2011_simulating_rivaroxaban_effects_on_b_model1805140001_model_summary"
      ],
      "from": "systemsbiology_sbml_burghaus2011_simulating_rivaroxaban_effects_on_b_model1805140001_model.summary"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_burghaus2011_simulating_rivaroxaban_effects_on_b_model1805140001_model_species_labels"
      ],
      "from": "systemsbiology_sbml_burghaus2011_simulating_rivaroxaban_effects_on_b_model1805140001_model.species_labels"
    }
  ],
  "runtime": {
    "duration": 1,
    "initial_inputs": {},
    "communication_step": 0.1
  },
  "description": "Systems Biology Burghaus2011Simulating Rivaroxaban Effects On BModel1805140001Model represents core biological mechanisms from biomodels_ebi reference biomodels_ebi:MODEL1805140001. When you run it, you can inspect state and compare temporal behavior between baseline and adjusted inputs.",
  "schema_version": "2.0"
}

Sign in to start your own run. Public-lab history stays visible here.

Select a run from History to view its results.