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Wodarz2018/1 - simple model Lab

About lab

The paper describes a basic model of effect of cellular de-differentiation on the dynamics and evolution of tissue and tumor cells. Created by COPASI 4.25 (Build 207) This model is described in the ar.

Runtime

Duration10
Comms Step1

Runs

Total0
Completed0
Failed0

Metadata

Packagewodarz2018-1-simple-model-lab
Created2026-05-16
Updated2026-05-16
biomodels_ebicuratedfaithfuloncologyphysiologysbmlsystemsbiologytumor-growthvisualisation

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_stem_like_cells",
        "label": "Stem-Like Cells",
        "units": "native SBML value",
        "default": 1,
        "maps_to": "oncology_sbml_wodarz2018_1_simple_model_biomd0000000774_model.initial_stem_like_cells",
        "description": "Initial Stem-Like Cells. Sets the initial value of bundled SBML symbol `S`."
      },
      {
        "name": "initial_differentiated_cells",
        "label": "Differentiated Cells",
        "units": "native SBML value",
        "default": 0,
        "maps_to": "oncology_sbml_wodarz2018_1_simple_model_biomd0000000774_model.initial_differentiated_cells",
        "description": "Initial Differentiated Cells. Sets the initial value of bundled SBML symbol `D`."
      }
    ],
    "outputs": [
      {
        "name": "stem_like_cells",
        "maps_to": "oncology_sbml_wodarz2018_1_simple_model_biomd0000000774_model.stem_like_cells",
        "description": "Stem-Like Cells observable. Maps to SBML symbol `S`."
      },
      {
        "name": "differentiated_cells",
        "maps_to": "oncology_sbml_wodarz2018_1_simple_model_biomd0000000774_model.differentiated_cells",
        "description": "Differentiated Cells observable. Maps to SBML symbol `D`."
      },
      {
        "name": "state",
        "maps_to": "oncology_sbml_wodarz2018_1_simple_model_biomd0000000774_model.state",
        "description": "Full raw SBML observable record for reproducibility and downstream visualisation."
      },
      {
        "name": "summary",
        "maps_to": "oncology_sbml_wodarz2018_1_simple_model_biomd0000000774_model.summary",
        "description": "Change and peak summary across the simulated SBML observables."
      },
      {
        "name": "species_labels",
        "maps_to": "oncology_sbml_wodarz2018_1_simple_model_biomd0000000774_model.species_labels",
        "description": "Mapping from selected raw SBML observable symbols to display labels."
      }
    ]
  },
  "tags": [
    "biomodels_ebi",
    "curated",
    "faithful",
    "oncology",
    "physiology",
    "sbml",
    "systemsbiology",
    "tumor-growth"
  ],
  "title": "Wodarz2018/1 - simple model Lab",
  "models": [
    {
      "path": "owned/models/oncology_sbml_wodarz2018_1_simple_model_biomd0000000774_model",
      "alias": "oncology_sbml_wodarz2018_1_simple_model_biomd0000000774_model",
      "provenance": {
        "owned_path": "owned/models/oncology_sbml_wodarz2018_1_simple_model_biomd0000000774_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.oncology_sbml_wodarz2018_1_simple_model_biomd0000000774_model_state"
      ],
      "from": "oncology_sbml_wodarz2018_1_simple_model_biomd0000000774_model.state"
    },
    {
      "to": [
        "visualisation.oncology_sbml_wodarz2018_1_simple_model_biomd0000000774_model_summary"
      ],
      "from": "oncology_sbml_wodarz2018_1_simple_model_biomd0000000774_model.summary"
    },
    {
      "to": [
        "visualisation.oncology_sbml_wodarz2018_1_simple_model_biomd0000000774_model_species_labels"
      ],
      "from": "oncology_sbml_wodarz2018_1_simple_model_biomd0000000774_model.species_labels"
    }
  ],
  "runtime": {
    "duration": 10,
    "initial_inputs": {},
    "communication_step": 1
  },
  "description": "The paper describes a basic model of effect of cellular de-differentiation on the dynamics and evolution of tissue and tumor cells. Created by COPASI 4.25 (Build 207) This model is described in the ar.",
  "schema_version": "2.0"
}

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