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Wolf2001 - Respiratory Oscillations Lab

About lab

Source-faithful physiology lab for Wolf2001_Respiratory_Oscillations. Public controls and outputs are mapped to real source symbols for oscillatory physiology.

Runtime

Duration0.01
Comms Step0.01
Settle Steps1

Runs

Total0
Completed0
Failed0

Metadata

Packagewolf2001-respiratory-oscillations-lab
Created2026-05-23
Updated2026-05-23
physiologysbmlbiomodels_ebifaithfulvisualisationother

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_atp",
        "label": "Initial ATP",
        "maps_to": "physiology_sbml_wolf2001_respiratory_oscillations_biomd0000000090_model.initial_atp",
        "description": "Initial value for ATP. Maps to source symbol `A3c`. Units: substance. Naming evidence: source metadata names `A3c` as `ATP`.",
        "accepted_units": [
          "substance"
        ]
      },
      {
        "name": "initial_atp_mit",
        "label": "Initial ATP Mit",
        "maps_to": "physiology_sbml_wolf2001_respiratory_oscillations_biomd0000000090_model.initial_atp_mit",
        "description": "Initial value for ATP Mit. Maps to source symbol `A3m`. Units: substance. Naming evidence: source metadata names `A3m` as `ATP_mit`.",
        "accepted_units": [
          "substance"
        ]
      }
    ],
    "outputs": [
      {
        "name": "state",
        "label": "Selected Source State",
        "maps_to": "physiology_sbml_wolf2001_respiratory_oscillations_biomd0000000090_model.state"
      },
      {
        "name": "summary",
        "label": "Simulation Summary",
        "maps_to": "physiology_sbml_wolf2001_respiratory_oscillations_biomd0000000090_model.summary"
      },
      {
        "name": "trajectory",
        "label": "Source Trajectory",
        "maps_to": "physiology_sbml_wolf2001_respiratory_oscillations_biomd0000000090_model.trajectory"
      },
      {
        "name": "species_labels",
        "label": "Observable Labels",
        "maps_to": "physiology_sbml_wolf2001_respiratory_oscillations_biomd0000000090_model.species_labels"
      },
      {
        "name": "atp",
        "label": "ATP",
        "maps_to": "physiology_sbml_wolf2001_respiratory_oscillations_biomd0000000090_model.atp",
        "description": "ATP. Maps to source symbol `A3c`. Units: substance. Naming evidence: source metadata names `A3c` as `ATP`."
      },
      {
        "name": "atp_mit",
        "label": "ATP Mit",
        "maps_to": "physiology_sbml_wolf2001_respiratory_oscillations_biomd0000000090_model.atp_mit",
        "description": "ATP Mit. Maps to source symbol `A3m`. Units: substance. Naming evidence: source metadata names `A3m` as `ATP_mit`."
      },
      {
        "name": "adp",
        "label": "ADP",
        "maps_to": "physiology_sbml_wolf2001_respiratory_oscillations_biomd0000000090_model.adp",
        "description": "ADP. Maps to source symbol `A2c`. Units: substance. Naming evidence: source metadata names `A2c` as `ADP`."
      },
      {
        "name": "adp_mit",
        "label": "ADP Mit",
        "maps_to": "physiology_sbml_wolf2001_respiratory_oscillations_biomd0000000090_model.adp_mit",
        "description": "ADP Mit. Maps to source symbol `A2m`. Units: substance. Naming evidence: source metadata names `A2m` as `ADP_mit`."
      },
      {
        "name": "ac_co_a",
        "label": "Ac Co A",
        "maps_to": "physiology_sbml_wolf2001_respiratory_oscillations_biomd0000000090_model.ac_co_a",
        "description": "Ac Co A. Maps to source symbol `aco`. Units: substance. Naming evidence: source metadata names `aco` as `AcCoA`."
      },
      {
        "name": "aps",
        "label": "Aps",
        "maps_to": "physiology_sbml_wolf2001_respiratory_oscillations_biomd0000000090_model.aps",
        "description": "Aps. Maps to source symbol `aps`. Units: substance. Naming evidence: source symbol, component, or units provide a direct public name."
      }
    ]
  },
  "title": "Wolf2001 - Respiratory Oscillations Lab",
  "models": [
    {
      "path": "owned/models/physiology_sbml_wolf2001_respiratory_oscillations_biomd0000000090_model",
      "alias": "physiology_sbml_wolf2001_respiratory_oscillations_biomd0000000090_model",
      "parameters": {
        "model_path": "data/BIOMD0000000090.xml",
        "integration_step": 0.01
      },
      "provenance": {
        "owned_path": "owned/models/physiology_sbml_wolf2001_respiratory_oscillations_biomd0000000090_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.physiology_sbml_wolf2001_respiratory_oscillations_biomd0000000090_model_state"
      ],
      "from": "physiology_sbml_wolf2001_respiratory_oscillations_biomd0000000090_model.state"
    },
    {
      "to": [
        "visualisation.physiology_sbml_wolf2001_respiratory_oscillations_biomd0000000090_model_summary"
      ],
      "from": "physiology_sbml_wolf2001_respiratory_oscillations_biomd0000000090_model.summary"
    },
    {
      "to": [
        "visualisation.physiology_sbml_wolf2001_respiratory_oscillations_biomd0000000090_model_trajectory"
      ],
      "from": "physiology_sbml_wolf2001_respiratory_oscillations_biomd0000000090_model.trajectory"
    },
    {
      "to": [
        "visualisation.physiology_sbml_wolf2001_respiratory_oscillations_biomd0000000090_model_species_labels"
      ],
      "from": "physiology_sbml_wolf2001_respiratory_oscillations_biomd0000000090_model.species_labels"
    }
  ],
  "runtime": {
    "duration": 0.01,
    "settle_steps": 1,
    "initial_inputs": {},
    "communication_step": 0.01
  },
  "description": "Source-faithful physiology lab for Wolf2001_Respiratory_Oscillations. Public controls and outputs are mapped to real source symbols for oscillatory physiology.",
  "schema_version": "2.0"
}

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