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Purvis2005 - Ionic Current Hypoglossal Motoneuron Lab

About lab

Source-faithful physiology lab for Purvis, Butera, 2005. Public controls and outputs are mapped to real source symbols for electrophysiology.

Runtime

Duration0.01
Comms Step0.01
Settle Steps1

Runs

Total0
Completed0
Failed0

Metadata

Packagepurvis2005-ionic-current-hypoglossal-motoneuron-lab
Created2026-05-23
Updated2026-05-23
physiologycellmlphysiomefaithfulvisualisationother

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_ca_conc",
        "label": "Initial Ca Conc",
        "maps_to": "physiology_cellml_purvis_butera_2005_2ee_model.initial_ca_conc",
        "description": "Initial value for Ca Conc. Maps to source symbol `Ca_conc`. Units: uM. Naming evidence: source symbol, component, or units provide a direct public name.",
        "accepted_units": [
          "uM"
        ]
      },
      {
        "name": "initial_calcium_dependent_potassium_current_z_gate_z",
        "label": "Initial Calcium Dependent Potassium Current Z Gate Z",
        "maps_to": "physiology_cellml_purvis_butera_2005_2ee_model.initial_calcium_dependent_potassium_current_z_gate_z",
        "description": "Initial value for Calcium Dependent Potassium Current Z Gate Z. Maps to source symbol `z`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name.",
        "accepted_units": [
          "dimensionless"
        ]
      }
    ],
    "outputs": [
      {
        "name": "state",
        "label": "Selected Source State",
        "maps_to": "physiology_cellml_purvis_butera_2005_2ee_model.state"
      },
      {
        "name": "summary",
        "label": "Simulation Summary",
        "maps_to": "physiology_cellml_purvis_butera_2005_2ee_model.summary"
      },
      {
        "name": "trajectory",
        "label": "Source Trajectory",
        "maps_to": "physiology_cellml_purvis_butera_2005_2ee_model.trajectory"
      },
      {
        "name": "variable_labels",
        "label": "Observable Labels",
        "maps_to": "physiology_cellml_purvis_butera_2005_2ee_model.variable_labels"
      },
      {
        "name": "ca_conc",
        "label": "Ca Conc",
        "maps_to": "physiology_cellml_purvis_butera_2005_2ee_model.ca_conc",
        "description": "Ca Conc. Maps to source symbol `Ca_conc`. Units: uM. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "calcium_dependent_potassium_current_z_gate_z",
        "label": "Calcium Dependent Potassium Current Z Gate Z",
        "maps_to": "physiology_cellml_purvis_butera_2005_2ee_model.calcium_dependent_potassium_current_z_gate_z",
        "description": "Calcium Dependent Potassium Current Z Gate Z. Maps to source symbol `z`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "potassium_conductance_g_sk",
        "label": "Potassium Conductance G Sk",
        "maps_to": "physiology_cellml_purvis_butera_2005_2ee_model.potassium_conductance_g_sk",
        "description": "Potassium Conductance G Sk. Maps to source symbol `g_SK`. Units: uS. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "potassium_current_i_sk",
        "label": "Potassium Current I Sk",
        "maps_to": "physiology_cellml_purvis_butera_2005_2ee_model.potassium_current_i_sk",
        "description": "Potassium Current I Sk. Maps to source symbol `i_SK`. Units: nanoA. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "tau_z",
        "label": "Tau Z",
        "maps_to": "physiology_cellml_purvis_butera_2005_2ee_model.tau_z",
        "description": "Tau Z. Maps to source symbol `tau_z`. Units: millisecond. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "calcium_dependent_potassium_current_z_gate_k1",
        "label": "Calcium Dependent Potassium Current Z Gate K1",
        "maps_to": "physiology_cellml_purvis_butera_2005_2ee_model.calcium_dependent_potassium_current_z_gate_k1",
        "description": "Calcium Dependent Potassium Current Z Gate K1. Maps to source symbol `K1`. Units: uM_per_nanocoulomb. Naming evidence: source symbol, component, or units provide a direct public name."
      }
    ]
  },
  "title": "Purvis2005 - Ionic Current Hypoglossal Motoneuron Lab",
  "models": [
    {
      "path": "owned/models/physiology_cellml_purvis_butera_2005_2ee_model",
      "alias": "physiology_cellml_purvis_butera_2005_2ee_model",
      "parameters": {
        "model_path": "data/purvis_butera_2005.cellml",
        "integration_step": 0.01
      },
      "provenance": {
        "owned_path": "owned/models/physiology_cellml_purvis_butera_2005_2ee_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.physiology_cellml_purvis_butera_2005_2ee_model_state"
      ],
      "from": "physiology_cellml_purvis_butera_2005_2ee_model.state"
    },
    {
      "to": [
        "visualisation.physiology_cellml_purvis_butera_2005_2ee_model_summary"
      ],
      "from": "physiology_cellml_purvis_butera_2005_2ee_model.summary"
    },
    {
      "to": [
        "visualisation.physiology_cellml_purvis_butera_2005_2ee_model_trajectory"
      ],
      "from": "physiology_cellml_purvis_butera_2005_2ee_model.trajectory"
    },
    {
      "to": [
        "visualisation.physiology_cellml_purvis_butera_2005_2ee_model_variable_labels"
      ],
      "from": "physiology_cellml_purvis_butera_2005_2ee_model.variable_labels"
    }
  ],
  "runtime": {
    "duration": 0.01,
    "settle_steps": 1,
    "initial_inputs": {},
    "communication_step": 0.01
  },
  "description": "Source-faithful physiology lab for Purvis, Butera, 2005. Public controls and outputs are mapped to real source symbols for electrophysiology.",
  "schema_version": "2.0"
}

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