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Haut1974 Pentose Cycle Rat Lab

About lab

This is the Unlabelled model as described in: Simulation of the Pentose Cycle in Lactating Rat Mammary Gland Haut MJ , London JW , Garfinkel D Biochem J. It can be used to explore systemsbiology haut1974 pentose cycle rat model1004070000 dynamics and compare simulation behavior across conditions.

Runtime

Duration1
Comms Step0.1

Runs

Total0
Completed0
Failed0

Metadata

Packagehaut1974-pentose-cycle-rat-lab
Created2026-05-17
Updated2026-05-17
systemsbiologysbmlbiomodels_ebifaithfulcuratedvisualisation

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_glucose_outside_cell",
        "label": "Initial Glucose Outside Cell",
        "maps_to": "systemsbiology_sbml_haut1974_pentose_cycle_rat_model1004070000_model.initial_glucose_outside_cell",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `glucose_outside_cell`."
      },
      {
        "name": "initial_glucose_6_phosphate",
        "label": "Initial Glucose 6 Phosphate",
        "maps_to": "systemsbiology_sbml_haut1974_pentose_cycle_rat_model1004070000_model.initial_glucose_6_phosphate",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `glucose_6_phosphate`."
      },
      {
        "name": "initial_nadp",
        "label": "Initial Nadp",
        "maps_to": "systemsbiology_sbml_haut1974_pentose_cycle_rat_model1004070000_model.initial_nadp",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `NADP`."
      },
      {
        "name": "initial_glucose_hexokinase",
        "label": "Initial Glucose Hexokinase",
        "maps_to": "systemsbiology_sbml_haut1974_pentose_cycle_rat_model1004070000_model.initial_glucose_hexokinase",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `glucose_hexokinase`."
      },
      {
        "name": "initial_glucose_inside_cell",
        "label": "Initial Glucose Inside Cell",
        "maps_to": "systemsbiology_sbml_haut1974_pentose_cycle_rat_model1004070000_model.initial_glucose_inside_cell",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `glucose_inside_cell`."
      },
      {
        "name": "initial_nadph",
        "label": "Initial Nadph",
        "maps_to": "systemsbiology_sbml_haut1974_pentose_cycle_rat_model1004070000_model.initial_nadph",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `NADPH`."
      }
    ],
    "outputs": [
      {
        "name": "state",
        "maps_to": "systemsbiology_sbml_haut1974_pentose_cycle_rat_model1004070000_model.state"
      },
      {
        "name": "summary",
        "maps_to": "systemsbiology_sbml_haut1974_pentose_cycle_rat_model1004070000_model.summary"
      },
      {
        "name": "species_labels",
        "maps_to": "systemsbiology_sbml_haut1974_pentose_cycle_rat_model1004070000_model.species_labels"
      },
      {
        "name": "glucose_outside_cell",
        "maps_to": "systemsbiology_sbml_haut1974_pentose_cycle_rat_model1004070000_model.glucose_outside_cell"
      },
      {
        "name": "glucose_6_phosphate",
        "maps_to": "systemsbiology_sbml_haut1974_pentose_cycle_rat_model1004070000_model.glucose_6_phosphate"
      },
      {
        "name": "nadp",
        "maps_to": "systemsbiology_sbml_haut1974_pentose_cycle_rat_model1004070000_model.nadp"
      },
      {
        "name": "glucose_hexokinase",
        "maps_to": "systemsbiology_sbml_haut1974_pentose_cycle_rat_model1004070000_model.glucose_hexokinase"
      },
      {
        "name": "glucose_inside_cell",
        "maps_to": "systemsbiology_sbml_haut1974_pentose_cycle_rat_model1004070000_model.glucose_inside_cell"
      },
      {
        "name": "nadph",
        "maps_to": "systemsbiology_sbml_haut1974_pentose_cycle_rat_model1004070000_model.nadph"
      }
    ]
  },
  "tags": [
    "systemsbiology",
    "sbml",
    "biomodels_ebi",
    "faithful",
    "curated"
  ],
  "title": "Haut1974 Pentose Cycle Rat Lab",
  "models": [
    {
      "path": "owned/models/systemsbiology_sbml_haut1974_pentose_cycle_rat_model1004070000_model",
      "alias": "systemsbiology_sbml_haut1974_pentose_cycle_rat_model1004070000_model",
      "provenance": {
        "owned_path": "owned/models/systemsbiology_sbml_haut1974_pentose_cycle_rat_model1004070000_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.systemsbiology_sbml_haut1974_pentose_cycle_rat_model1004070000_model_state"
      ],
      "from": "systemsbiology_sbml_haut1974_pentose_cycle_rat_model1004070000_model.state"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_haut1974_pentose_cycle_rat_model1004070000_model_summary"
      ],
      "from": "systemsbiology_sbml_haut1974_pentose_cycle_rat_model1004070000_model.summary"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_haut1974_pentose_cycle_rat_model1004070000_model_species_labels"
      ],
      "from": "systemsbiology_sbml_haut1974_pentose_cycle_rat_model1004070000_model.species_labels"
    }
  ],
  "runtime": {
    "duration": 1,
    "initial_inputs": {},
    "communication_step": 0.1
  },
  "description": "This is the Unlabelled model as described in: Simulation of the Pentose Cycle in Lactating Rat Mammary Gland Haut MJ , London JW , Garfinkel D Biochem J. It can be used to explore systemsbiology haut1974 pentose cycle rat model1004070000 dynamics and compare simulation behavior across conditions.",
  "schema_version": "2.0"
}

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