Nishio2008 - Design of the phosphotransferase system for enhanced glucose uptake in E. coli. Lab

{
  "io": {
    "inputs": [
      {
        "name": "glucose_concentration",
        "maps_to": "nishio2008_ecoli_phosphotransferase_system.glucose_concentration"
      }
    ],
    "outputs": [
      {
        "name": "state",
        "maps_to": "nishio2008_ecoli_phosphotransferase_system.state"
      },
      {
        "name": "summary",
        "maps_to": "nishio2008_ecoli_phosphotransferase_system.summary"
      },
      {
        "name": "species_labels",
        "maps_to": "nishio2008_ecoli_phosphotransferase_system.species_labels"
      },
      {
        "name": "camp_receptor_protein",
        "maps_to": "nishio2008_ecoli_phosphotransferase_system.camp_receptor_protein"
      },
      {
        "name": "camp_receptor_protein_bound_site_one",
        "maps_to": "nishio2008_ecoli_phosphotransferase_system.camp_receptor_protein_bound_site_one"
      },
      {
        "name": "camp_receptor_protein_bound_site_two",
        "maps_to": "nishio2008_ecoli_phosphotransferase_system.camp_receptor_protein_bound_site_two"
      },
      {
        "name": "camp_receptor_protein_bound_cyaa_site",
        "maps_to": "nishio2008_ecoli_phosphotransferase_system.camp_receptor_protein_bound_cyaa_site"
      }
    ]
  },
  "title": "Nishio2008 - Design of the phosphotransferase system for enhanced glucose uptake in E. coli. Lab",
  "models": [
    {
      "path": "owned/models/nishio2008_ecoli_phosphotransferase_system",
      "alias": "nishio2008_ecoli_phosphotransferase_system",
      "provenance": {
        "owned_path": "owned/models/nishio2008_ecoli_phosphotransferase_system"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.nishio2008_ecoli_phosphotransferase_system_state"
      ],
      "from": "nishio2008_ecoli_phosphotransferase_system.state"
    },
    {
      "to": [
        "visualisation.nishio2008_ecoli_phosphotransferase_system_summary"
      ],
      "from": "nishio2008_ecoli_phosphotransferase_system.summary"
    },
    {
      "to": [
        "visualisation.nishio2008_ecoli_phosphotransferase_system_species_labels"
      ],
      "from": "nishio2008_ecoli_phosphotransferase_system.species_labels"
    },
    {
      "to": [
        "visualisation.nishio2008_ecoli_phosphotransferase_system_camp_receptor_protein"
      ],
      "from": "nishio2008_ecoli_phosphotransferase_system.camp_receptor_protein"
    },
    {
      "to": [
        "visualisation.nishio2008_ecoli_phosphotransferase_system_camp_receptor_protein_bound_site_one"
      ],
      "from": "nishio2008_ecoli_phosphotransferase_system.camp_receptor_protein_bound_site_one"
    },
    {
      "to": [
        "visualisation.nishio2008_ecoli_phosphotransferase_system_camp_receptor_protein_bound_site_two"
      ],
      "from": "nishio2008_ecoli_phosphotransferase_system.camp_receptor_protein_bound_site_two"
    },
    {
      "to": [
        "visualisation.nishio2008_ecoli_phosphotransferase_system_camp_receptor_protein_bound_cyaa_site"
      ],
      "from": "nishio2008_ecoli_phosphotransferase_system.camp_receptor_protein_bound_cyaa_site"
    }
  ],
  "runtime": {
    "duration": 2,
    "initial_inputs": {},
    "communication_step": 0.01
  },
  "description": "Curated microbiology lab for Nishio2008 - Design of the phosphotransferase system for enhanced glucose uptake in E. coli.. The bundled SBML is executed directly through Tellurium and visualised with conservative, source-traceable labels.",
  "schema_version": "2.0"
}