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Mc2001 - Intyre Richardson Grill Lab

About lab

Source-faithful physiology lab for McIntyre, Richardson, Grill, 2001. Public controls and outputs are mapped to real source symbols for electrophysiology.

Runtime

Duration0.01
Comms Step0.01
Settle Steps1

Runs

Total0
Completed0
Failed0

Metadata

Packagemc2001-intyre-richardson-grill-lab
Created2026-05-23
Updated2026-05-23
physiologycellmlphysiomefaithfulvisualisationother

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_membrane_voltage",
        "label": "Initial Membrane Voltage",
        "maps_to": "physiology_cellml_mcintyre_richardson_grill_2001_5f5_model.initial_membrane_voltage",
        "description": "Initial value for Membrane Voltage. Maps to source symbol `V_m`. Units: mV. Naming evidence: source symbol, component, or units provide a direct public name.",
        "accepted_units": [
          "mV"
        ]
      },
      {
        "name": "initial_sodium_h_gate",
        "label": "Initial Sodium H Gate",
        "maps_to": "physiology_cellml_mcintyre_richardson_grill_2001_5f5_model.initial_sodium_h_gate",
        "description": "Initial value for Sodium H Gate. Maps to source symbol `h`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name.",
        "accepted_units": [
          "dimensionless"
        ]
      }
    ],
    "outputs": [
      {
        "name": "state",
        "label": "Selected Source State",
        "maps_to": "physiology_cellml_mcintyre_richardson_grill_2001_5f5_model.state"
      },
      {
        "name": "summary",
        "label": "Simulation Summary",
        "maps_to": "physiology_cellml_mcintyre_richardson_grill_2001_5f5_model.summary"
      },
      {
        "name": "trajectory",
        "label": "Source Trajectory",
        "maps_to": "physiology_cellml_mcintyre_richardson_grill_2001_5f5_model.trajectory"
      },
      {
        "name": "variable_labels",
        "label": "Observable Labels",
        "maps_to": "physiology_cellml_mcintyre_richardson_grill_2001_5f5_model.variable_labels"
      },
      {
        "name": "membrane_voltage",
        "label": "Membrane Voltage",
        "maps_to": "physiology_cellml_mcintyre_richardson_grill_2001_5f5_model.membrane_voltage",
        "description": "Membrane Voltage. Maps to source symbol `V_m`. Units: mV. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "sodium_reversal_potential",
        "label": "Sodium Reversal Potential",
        "maps_to": "physiology_cellml_mcintyre_richardson_grill_2001_5f5_model.sodium_reversal_potential",
        "description": "Sodium Reversal Potential. Maps to source symbol `E_Na`. Units: mV. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "potassium_reversal_potential",
        "label": "Potassium Reversal Potential",
        "maps_to": "physiology_cellml_mcintyre_richardson_grill_2001_5f5_model.potassium_reversal_potential",
        "description": "Potassium Reversal Potential. Maps to source symbol `E_K`. Units: mV. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "sodium_current",
        "label": "Sodium Current",
        "maps_to": "physiology_cellml_mcintyre_richardson_grill_2001_5f5_model.sodium_current",
        "description": "Sodium Current. Maps to source symbol `i_Nap`. Units: mA_per_cm2. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "sodium_current_i_naf",
        "label": "Sodium Current I Naf",
        "maps_to": "physiology_cellml_mcintyre_richardson_grill_2001_5f5_model.sodium_current_i_naf",
        "description": "Sodium Current I Naf. Maps to source symbol `i_Naf`. Units: mA_per_cm2. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "potassium_current",
        "label": "Potassium Current",
        "maps_to": "physiology_cellml_mcintyre_richardson_grill_2001_5f5_model.potassium_current",
        "description": "Potassium Current. Maps to source symbol `i_Kf`. Units: mA_per_cm2. Naming evidence: source symbol, component, or units provide a direct public name."
      }
    ]
  },
  "title": "Mc2001 - Intyre Richardson Grill Lab",
  "models": [
    {
      "path": "owned/models/physiology_cellml_mcintyre_richardson_grill_2001_5f5_model",
      "alias": "physiology_cellml_mcintyre_richardson_grill_2001_5f5_model",
      "parameters": {
        "model_path": "data/mcintyre_richardson_grill_model_2001.cellml",
        "integration_step": 0.01
      },
      "provenance": {
        "owned_path": "owned/models/physiology_cellml_mcintyre_richardson_grill_2001_5f5_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.physiology_cellml_mcintyre_richardson_grill_2001_5f5_model_state"
      ],
      "from": "physiology_cellml_mcintyre_richardson_grill_2001_5f5_model.state"
    },
    {
      "to": [
        "visualisation.physiology_cellml_mcintyre_richardson_grill_2001_5f5_model_summary"
      ],
      "from": "physiology_cellml_mcintyre_richardson_grill_2001_5f5_model.summary"
    },
    {
      "to": [
        "visualisation.physiology_cellml_mcintyre_richardson_grill_2001_5f5_model_trajectory"
      ],
      "from": "physiology_cellml_mcintyre_richardson_grill_2001_5f5_model.trajectory"
    },
    {
      "to": [
        "visualisation.physiology_cellml_mcintyre_richardson_grill_2001_5f5_model_variable_labels"
      ],
      "from": "physiology_cellml_mcintyre_richardson_grill_2001_5f5_model.variable_labels"
    }
  ],
  "runtime": {
    "duration": 0.01,
    "settle_steps": 1,
    "initial_inputs": {},
    "communication_step": 0.01
  },
  "description": "Source-faithful physiology lab for McIntyre, Richardson, Grill, 2001. Public controls and outputs are mapped to real source symbols for electrophysiology.",
  "schema_version": "2.0"
}

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