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Sneyd2002 - Dufour Dynamic Type 2 Inositol Triphosphate Receptor Lab

About lab

Source-faithful physiology lab for Sneyd, Dufour, 2002. Public controls and outputs are mapped to real source symbols for signalling physiology.

Runtime

Duration0.01
Comms Step0.01
Settle Steps1

Runs

Total0
Completed0
Failed0

Metadata

Packagesneyd2002-dufour-dynamic-type-2-inositol-triphosphate-receptor-l
Created2026-05-23
Updated2026-05-23
physiologycellmlphysiomefaithfulvisualisationother

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_receptor",
        "label": "Initial Receptor",
        "maps_to": "physiology_cellml_sneyd_dufour_2002_sneyddufour2002_model.initial_receptor",
        "description": "Initial value for Receptor. Maps to source symbol `R`. Units: dimensionless. Naming evidence: source metadata names `R` as `Receptor`.",
        "accepted_units": [
          "dimensionless"
        ]
      },
      {
        "name": "initial_active_state",
        "label": "Initial Active State",
        "maps_to": "physiology_cellml_sneyd_dufour_2002_sneyddufour2002_model.initial_active_state",
        "description": "Initial value for Active State. Maps to source symbol `A`. Units: dimensionless. Naming evidence: source metadata names `A` as `Active state`.",
        "accepted_units": [
          "dimensionless"
        ]
      }
    ],
    "outputs": [
      {
        "name": "state",
        "label": "Selected Source State",
        "maps_to": "physiology_cellml_sneyd_dufour_2002_sneyddufour2002_model.state"
      },
      {
        "name": "summary",
        "label": "Simulation Summary",
        "maps_to": "physiology_cellml_sneyd_dufour_2002_sneyddufour2002_model.summary"
      },
      {
        "name": "trajectory",
        "label": "Source Trajectory",
        "maps_to": "physiology_cellml_sneyd_dufour_2002_sneyddufour2002_model.trajectory"
      },
      {
        "name": "variable_labels",
        "label": "Observable Labels",
        "maps_to": "physiology_cellml_sneyd_dufour_2002_sneyddufour2002_model.variable_labels"
      },
      {
        "name": "receptor",
        "label": "Receptor",
        "maps_to": "physiology_cellml_sneyd_dufour_2002_sneyddufour2002_model.receptor",
        "description": "Receptor. Maps to source symbol `R`. Units: dimensionless. Naming evidence: source metadata names `R` as `Receptor`."
      },
      {
        "name": "active_state",
        "label": "Active State",
        "maps_to": "physiology_cellml_sneyd_dufour_2002_sneyddufour2002_model.active_state",
        "description": "Active State. Maps to source symbol `A`. Units: dimensionless. Naming evidence: source metadata names `A` as `Active state`."
      },
      {
        "name": "inactive_state_1",
        "label": "Inactive State 1",
        "maps_to": "physiology_cellml_sneyd_dufour_2002_sneyddufour2002_model.inactive_state_1",
        "description": "Inactive State 1. Maps to source symbol `I_1`. Units: dimensionless. Naming evidence: source metadata names `I_1` as `Inactive state 1`."
      },
      {
        "name": "inactive_state_2",
        "label": "Inactive State 2",
        "maps_to": "physiology_cellml_sneyd_dufour_2002_sneyddufour2002_model.inactive_state_2",
        "description": "Inactive State 2. Maps to source symbol `I_2`. Units: dimensionless. Naming evidence: source metadata names `I_2` as `Inactive state 2`."
      },
      {
        "name": "open_state",
        "label": "Open State",
        "maps_to": "physiology_cellml_sneyd_dufour_2002_sneyddufour2002_model.open_state",
        "description": "Open State. Maps to source symbol `O`. Units: dimensionless. Naming evidence: source metadata names `O` as `Open state`."
      },
      {
        "name": "concentration_l_1",
        "label": "Concentration L 1 (source L_1)",
        "maps_to": "physiology_cellml_sneyd_dufour_2002_sneyddufour2002_model.concentration_l_1",
        "description": "Concentration L 1 (source L_1). Maps to source symbol `L_1`. Units: micromolar. Naming evidence: amount concentration units identify a concentration state."
      }
    ]
  },
  "title": "Sneyd2002 - Dufour Dynamic Type 2 Inositol Triphosphate Receptor Lab",
  "models": [
    {
      "path": "owned/models/physiology_cellml_sneyd_dufour_2002_sneyddufour2002_model",
      "alias": "physiology_cellml_sneyd_dufour_2002_sneyddufour2002_model",
      "parameters": {
        "model_path": "data/sneyd_dufour_2002.cellml",
        "integration_step": 0.01
      },
      "provenance": {
        "owned_path": "owned/models/physiology_cellml_sneyd_dufour_2002_sneyddufour2002_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.physiology_cellml_sneyd_dufour_2002_sneyddufour2002_model_state"
      ],
      "from": "physiology_cellml_sneyd_dufour_2002_sneyddufour2002_model.state"
    },
    {
      "to": [
        "visualisation.physiology_cellml_sneyd_dufour_2002_sneyddufour2002_model_summary"
      ],
      "from": "physiology_cellml_sneyd_dufour_2002_sneyddufour2002_model.summary"
    },
    {
      "to": [
        "visualisation.physiology_cellml_sneyd_dufour_2002_sneyddufour2002_model_trajectory"
      ],
      "from": "physiology_cellml_sneyd_dufour_2002_sneyddufour2002_model.trajectory"
    },
    {
      "to": [
        "visualisation.physiology_cellml_sneyd_dufour_2002_sneyddufour2002_model_variable_labels"
      ],
      "from": "physiology_cellml_sneyd_dufour_2002_sneyddufour2002_model.variable_labels"
    }
  ],
  "runtime": {
    "duration": 0.01,
    "settle_steps": 1,
    "initial_inputs": {},
    "communication_step": 0.01
  },
  "description": "Source-faithful physiology lab for Sneyd, Dufour, 2002. Public controls and outputs are mapped to real source symbols for signalling physiology.",
  "schema_version": "2.0"
}

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