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Hong2009 Circadianclock Lab

About lab

This a model from the article: Minimum criteria for DNA damage-induced phase advances in circadian rhythms. It can be used to explore systemsbiology hong2009 circadianclock BioModels0000000216 dynamics and compare simulation behavior across conditions.

Runtime

Duration1
Comms Step0.1

Runs

Total0
Completed0
Failed0

Metadata

Packagehong2009-circadianclock-lab
Created2026-05-17
Updated2026-05-17
cellcyclesystemsbiologysbmlbiomodels_ebifaithfulcuratedvisualisation

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_model_state_ic",
        "label": "Initial Model State Ic",
        "maps_to": "systemsbiology_sbml_hong2009_circadianclock_biomd0000000216_model.initial_model_state_ic",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `IC`."
      },
      {
        "name": "initial_model_state_tf",
        "label": "Initial Model State Tf",
        "maps_to": "systemsbiology_sbml_hong2009_circadianclock_biomd0000000216_model.initial_model_state_tf",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `TF`."
      },
      {
        "name": "initial_model_state_cp2",
        "label": "Initial Model State CP2",
        "maps_to": "systemsbiology_sbml_hong2009_circadianclock_biomd0000000216_model.initial_model_state_cp2",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `CP2`."
      },
      {
        "name": "initial_model_state_cp",
        "label": "Initial Model State Cp",
        "maps_to": "systemsbiology_sbml_hong2009_circadianclock_biomd0000000216_model.initial_model_state_cp",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `CP`."
      },
      {
        "name": "initial_c_ptot",
        "label": "Initial C Ptot",
        "maps_to": "systemsbiology_sbml_hong2009_circadianclock_biomd0000000216_model.initial_c_ptot",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `CPtot`."
      },
      {
        "name": "initial_model_state_m",
        "label": "Initial Model State M",
        "maps_to": "systemsbiology_sbml_hong2009_circadianclock_biomd0000000216_model.initial_model_state_m",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `M`."
      }
    ],
    "outputs": [
      {
        "name": "state",
        "maps_to": "systemsbiology_sbml_hong2009_circadianclock_biomd0000000216_model.state"
      },
      {
        "name": "summary",
        "maps_to": "systemsbiology_sbml_hong2009_circadianclock_biomd0000000216_model.summary"
      },
      {
        "name": "species_labels",
        "maps_to": "systemsbiology_sbml_hong2009_circadianclock_biomd0000000216_model.species_labels"
      },
      {
        "name": "model_state_ic",
        "maps_to": "systemsbiology_sbml_hong2009_circadianclock_biomd0000000216_model.model_state_ic"
      },
      {
        "name": "model_state_tf",
        "maps_to": "systemsbiology_sbml_hong2009_circadianclock_biomd0000000216_model.model_state_tf"
      },
      {
        "name": "cp2",
        "maps_to": "systemsbiology_sbml_hong2009_circadianclock_biomd0000000216_model.cp2"
      },
      {
        "name": "model_state_cp",
        "maps_to": "systemsbiology_sbml_hong2009_circadianclock_biomd0000000216_model.model_state_cp"
      },
      {
        "name": "c_ptot",
        "maps_to": "systemsbiology_sbml_hong2009_circadianclock_biomd0000000216_model.c_ptot"
      },
      {
        "name": "model_state_m",
        "maps_to": "systemsbiology_sbml_hong2009_circadianclock_biomd0000000216_model.model_state_m"
      }
    ]
  },
  "tags": [
    "cellcycle",
    "systemsbiology",
    "sbml",
    "biomodels_ebi",
    "faithful",
    "curated"
  ],
  "title": "Hong2009 Circadianclock Lab",
  "models": [
    {
      "path": "owned/models/systemsbiology_sbml_hong2009_circadianclock_biomd0000000216_model",
      "alias": "systemsbiology_sbml_hong2009_circadianclock_biomd0000000216_model",
      "provenance": {
        "owned_path": "owned/models/systemsbiology_sbml_hong2009_circadianclock_biomd0000000216_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.systemsbiology_sbml_hong2009_circadianclock_biomd0000000216_model_state"
      ],
      "from": "systemsbiology_sbml_hong2009_circadianclock_biomd0000000216_model.state"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_hong2009_circadianclock_biomd0000000216_model_summary"
      ],
      "from": "systemsbiology_sbml_hong2009_circadianclock_biomd0000000216_model.summary"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_hong2009_circadianclock_biomd0000000216_model_species_labels"
      ],
      "from": "systemsbiology_sbml_hong2009_circadianclock_biomd0000000216_model.species_labels"
    }
  ],
  "runtime": {
    "duration": 1,
    "initial_inputs": {},
    "communication_step": 0.1
  },
  "description": "This a model from the article: Minimum criteria for DNA damage-induced phase advances in circadian rhythms. It can be used to explore systemsbiology hong2009 circadianclock BioModels0000000216 dynamics and compare simulation behavior across conditions.",
  "schema_version": "2.0"
}

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