BiosimulantBiosimulant
Docs
Search labs...
Sign inGet Started

Thomas2000 - Mathematical Inner Medullary Lactate Production Lab

About lab

Source-faithful physiology lab for Thomas, 2000. Public controls and outputs are mapped to real source symbols for source-model physiology.

Runtime

Duration0.01
Comms Step0.01
Settle Steps1

Runs

Total0
Completed0
Failed0

Metadata

Packagethomas2000-mathematical-inner-medullary-lactate-production-lab
Created2026-05-23
Updated2026-05-23
physiologycellmlphysiomefaithfulvisualisationother

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_f_avr_glu",
        "label": "Initial F Avr Glu",
        "maps_to": "physiology_cellml_thomas_2000_256_model.initial_f_avr_glu",
        "description": "Initial value for F Avr Glu. Maps to source symbol `F_AVR_GLU`. Units: pmol_min. Naming evidence: source symbol, component, or units provide a direct public name.",
        "accepted_units": [
          "pmol_min"
        ]
      },
      {
        "name": "initial_f_avr_lac",
        "label": "Initial F Avr Lac",
        "maps_to": "physiology_cellml_thomas_2000_256_model.initial_f_avr_lac",
        "description": "Initial value for F Avr Lac. Maps to source symbol `F_AVR_LAC`. Units: pmol_min. Naming evidence: source symbol, component, or units provide a direct public name.",
        "accepted_units": [
          "pmol_min"
        ]
      }
    ],
    "outputs": [
      {
        "name": "state",
        "label": "Selected Source State",
        "maps_to": "physiology_cellml_thomas_2000_256_model.state"
      },
      {
        "name": "summary",
        "label": "Simulation Summary",
        "maps_to": "physiology_cellml_thomas_2000_256_model.summary"
      },
      {
        "name": "trajectory",
        "label": "Source Trajectory",
        "maps_to": "physiology_cellml_thomas_2000_256_model.trajectory"
      },
      {
        "name": "variable_labels",
        "label": "Observable Labels",
        "maps_to": "physiology_cellml_thomas_2000_256_model.variable_labels"
      },
      {
        "name": "f_avr_glu",
        "label": "F Avr Glu",
        "maps_to": "physiology_cellml_thomas_2000_256_model.f_avr_glu",
        "description": "F Avr Glu. Maps to source symbol `F_AVR_GLU`. Units: pmol_min. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "f_avr_lac",
        "label": "F Avr Lac",
        "maps_to": "physiology_cellml_thomas_2000_256_model.f_avr_lac",
        "description": "F Avr Lac. Maps to source symbol `F_AVR_LAC`. Units: pmol_min. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "f_avr_v",
        "label": "F Avr V",
        "maps_to": "physiology_cellml_thomas_2000_256_model.f_avr_v",
        "description": "F Avr V. Maps to source symbol `F_AVR_v`. Units: nl_min. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "f_dvr_glu",
        "label": "F Dvr Glu",
        "maps_to": "physiology_cellml_thomas_2000_256_model.f_dvr_glu",
        "description": "F Dvr Glu. Maps to source symbol `F_DVR_GLU`. Units: pmol_min. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "f_dvr_lac",
        "label": "F Dvr Lac",
        "maps_to": "physiology_cellml_thomas_2000_256_model.f_dvr_lac",
        "description": "F Dvr Lac. Maps to source symbol `F_DVR_LAC`. Units: pmol_min. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "f_dvr_v",
        "label": "F Dvr V",
        "maps_to": "physiology_cellml_thomas_2000_256_model.f_dvr_v",
        "description": "F Dvr V. Maps to source symbol `F_DVR_v`. Units: nl_min. Naming evidence: source symbol, component, or units provide a direct public name."
      }
    ]
  },
  "title": "Thomas2000 - Mathematical Inner Medullary Lactate Production Lab",
  "models": [
    {
      "path": "owned/models/physiology_cellml_thomas_2000_256_model",
      "alias": "physiology_cellml_thomas_2000_256_model",
      "parameters": {
        "model_path": "data/thomas_2000.cellml",
        "integration_step": 0.01
      },
      "provenance": {
        "owned_path": "owned/models/physiology_cellml_thomas_2000_256_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.physiology_cellml_thomas_2000_256_model_state"
      ],
      "from": "physiology_cellml_thomas_2000_256_model.state"
    },
    {
      "to": [
        "visualisation.physiology_cellml_thomas_2000_256_model_summary"
      ],
      "from": "physiology_cellml_thomas_2000_256_model.summary"
    },
    {
      "to": [
        "visualisation.physiology_cellml_thomas_2000_256_model_trajectory"
      ],
      "from": "physiology_cellml_thomas_2000_256_model.trajectory"
    },
    {
      "to": [
        "visualisation.physiology_cellml_thomas_2000_256_model_variable_labels"
      ],
      "from": "physiology_cellml_thomas_2000_256_model.variable_labels"
    }
  ],
  "runtime": {
    "duration": 0.01,
    "settle_steps": 1,
    "initial_inputs": {},
    "communication_step": 0.01
  },
  "description": "Source-faithful physiology lab for Thomas, 2000. Public controls and outputs are mapped to real source symbols for source-model physiology.",
  "schema_version": "2.0"
}

Sign in to start your own run. Public-lab history stays visible here.

Select a run from History to view its results.