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Bagci2008 No Apoptosis Modelb Lab

About lab

This a model from the article: Computational insights on the competing effects of nitric oxide in regulatingapoptosis. Bagci EZ, Vodovotz Y, Billiar TR, Ermentrout B, Bahar I.

Runtime

Duration1
Comms Step0.1

Runs

Total0
Completed0
Failed0

Metadata

Packagebagci2008-no-apoptosis-modelb-lab
Created2026-05-17
Updated2026-05-17
systemsbiologysbmlbiomodels_ebifaithfulcuratedvisualisation

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_cytc_apaf_1",
        "label": "Initial Cytc Apaf 1",
        "maps_to": "systemsbiology_sbml_bagci2008_no_apoptosis_modelb_model1006230026_model.initial_cytc_apaf_1",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `CytcApaf_1`."
      },
      {
        "name": "initial_casp9_pro3",
        "label": "Initial Casp9 Pro3",
        "maps_to": "systemsbiology_sbml_bagci2008_no_apoptosis_modelb_model1006230026_model.initial_casp9_pro3",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `Casp9Pro3`."
      },
      {
        "name": "initial_casp9_iap",
        "label": "Initial Casp9 Iap",
        "maps_to": "systemsbiology_sbml_bagci2008_no_apoptosis_modelb_model1006230026_model.initial_casp9_iap",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `Casp9IAP`."
      },
      {
        "name": "initial_casp9",
        "label": "Initial Casp9",
        "maps_to": "systemsbiology_sbml_bagci2008_no_apoptosis_modelb_model1006230026_model.initial_casp9",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `Casp9`."
      },
      {
        "name": "initial_casp8_bid",
        "label": "Initial Casp8 Bid",
        "maps_to": "systemsbiology_sbml_bagci2008_no_apoptosis_modelb_model1006230026_model.initial_casp8_bid",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `Casp8Bid`."
      },
      {
        "name": "initial_casp8",
        "label": "Initial Casp8",
        "maps_to": "systemsbiology_sbml_bagci2008_no_apoptosis_modelb_model1006230026_model.initial_casp8",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `Casp8`."
      }
    ],
    "outputs": [
      {
        "name": "state",
        "maps_to": "systemsbiology_sbml_bagci2008_no_apoptosis_modelb_model1006230026_model.state"
      },
      {
        "name": "summary",
        "maps_to": "systemsbiology_sbml_bagci2008_no_apoptosis_modelb_model1006230026_model.summary"
      },
      {
        "name": "species_labels",
        "maps_to": "systemsbiology_sbml_bagci2008_no_apoptosis_modelb_model1006230026_model.species_labels"
      },
      {
        "name": "cytc_apaf_1",
        "maps_to": "systemsbiology_sbml_bagci2008_no_apoptosis_modelb_model1006230026_model.cytc_apaf_1"
      },
      {
        "name": "casp9_pro3",
        "maps_to": "systemsbiology_sbml_bagci2008_no_apoptosis_modelb_model1006230026_model.casp9_pro3"
      },
      {
        "name": "casp9_iap",
        "maps_to": "systemsbiology_sbml_bagci2008_no_apoptosis_modelb_model1006230026_model.casp9_iap"
      },
      {
        "name": "casp9",
        "maps_to": "systemsbiology_sbml_bagci2008_no_apoptosis_modelb_model1006230026_model.casp9"
      },
      {
        "name": "casp8_bid",
        "maps_to": "systemsbiology_sbml_bagci2008_no_apoptosis_modelb_model1006230026_model.casp8_bid"
      },
      {
        "name": "casp8",
        "maps_to": "systemsbiology_sbml_bagci2008_no_apoptosis_modelb_model1006230026_model.casp8"
      }
    ]
  },
  "tags": [
    "systemsbiology",
    "sbml",
    "biomodels_ebi",
    "faithful",
    "curated"
  ],
  "title": "Bagci2008 No Apoptosis Modelb Lab",
  "models": [
    {
      "path": "owned/models/systemsbiology_sbml_bagci2008_no_apoptosis_modelb_model1006230026_model",
      "alias": "systemsbiology_sbml_bagci2008_no_apoptosis_modelb_model1006230026_model",
      "provenance": {
        "owned_path": "owned/models/systemsbiology_sbml_bagci2008_no_apoptosis_modelb_model1006230026_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.systemsbiology_sbml_bagci2008_no_apoptosis_modelb_model1006230026_model_state"
      ],
      "from": "systemsbiology_sbml_bagci2008_no_apoptosis_modelb_model1006230026_model.state"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_bagci2008_no_apoptosis_modelb_model1006230026_model_summary"
      ],
      "from": "systemsbiology_sbml_bagci2008_no_apoptosis_modelb_model1006230026_model.summary"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_bagci2008_no_apoptosis_modelb_model1006230026_model_species_labels"
      ],
      "from": "systemsbiology_sbml_bagci2008_no_apoptosis_modelb_model1006230026_model.species_labels"
    }
  ],
  "runtime": {
    "duration": 1,
    "initial_inputs": {},
    "communication_step": 0.1
  },
  "description": "This a model from the article: Computational insights on the competing effects of nitric oxide in regulatingapoptosis. Bagci EZ, Vodovotz Y, Billiar TR, Ermentrout B, Bahar I.",
  "schema_version": "2.0"
}

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