Conradie2010 - Cell Cycle Lab

{
  "io": {
    "inputs": [
      {
        "name": "initial_cell_cycle_state_cd",
        "label": "Initial Cell Cycle State Cd (source CD)",
        "maps_to": "physiology_cellml_conradie_bruggeman_ciliberto_csikasz_nagy_novak_conradiebruggemancilibertocsikasznagynovakwesterhoffsnoep2010_model.initial_cell_cycle_state_cd",
        "description": "Initial value for Cell Cycle State Cd (source CD). Maps to source symbol `CD`. Units: dimensionless. Naming evidence: cell-cycle context supports a conservative source-state label.",
        "accepted_units": [
          "dimensionless"
        ]
      },
      {
        "name": "initial_cell_cycle_state_ce",
        "label": "Initial Cell Cycle State Ce (source CE)",
        "maps_to": "physiology_cellml_conradie_bruggeman_ciliberto_csikasz_nagy_novak_conradiebruggemancilibertocsikasznagynovakwesterhoffsnoep2010_model.initial_cell_cycle_state_ce",
        "description": "Initial value for Cell Cycle State Ce (source CE). Maps to source symbol `CE`. Units: dimensionless. Naming evidence: cell-cycle context supports a conservative source-state label.",
        "accepted_units": [
          "dimensionless"
        ]
      }
    ],
    "outputs": [
      {
        "name": "state",
        "label": "Selected Source State",
        "maps_to": "physiology_cellml_conradie_bruggeman_ciliberto_csikasz_nagy_novak_conradiebruggemancilibertocsikasznagynovakwesterhoffsnoep2010_model.state"
      },
      {
        "name": "summary",
        "label": "Simulation Summary",
        "maps_to": "physiology_cellml_conradie_bruggeman_ciliberto_csikasz_nagy_novak_conradiebruggemancilibertocsikasznagynovakwesterhoffsnoep2010_model.summary"
      },
      {
        "name": "trajectory",
        "label": "Source Trajectory",
        "maps_to": "physiology_cellml_conradie_bruggeman_ciliberto_csikasz_nagy_novak_conradiebruggemancilibertocsikasznagynovakwesterhoffsnoep2010_model.trajectory"
      },
      {
        "name": "variable_labels",
        "label": "Observable Labels",
        "maps_to": "physiology_cellml_conradie_bruggeman_ciliberto_csikasz_nagy_novak_conradiebruggemancilibertocsikasznagynovakwesterhoffsnoep2010_model.variable_labels"
      },
      {
        "name": "calcium",
        "label": "Calcium",
        "maps_to": "physiology_cellml_conradie_bruggeman_ciliberto_csikasz_nagy_novak_conradiebruggemancilibertocsikasznagynovakwesterhoffsnoep2010_model.calcium",
        "description": "Calcium. Maps to source symbol `CA`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "cdc20_t",
        "label": "Cdc20 T",
        "maps_to": "physiology_cellml_conradie_bruggeman_ciliberto_csikasz_nagy_novak_conradiebruggemancilibertocsikasznagynovakwesterhoffsnoep2010_model.cdc20_t",
        "description": "Cdc20 T. Maps to source symbol `Cdc20T`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "cdh1",
        "label": "Cdh1",
        "maps_to": "physiology_cellml_conradie_bruggeman_ciliberto_csikasz_nagy_novak_conradiebruggemancilibertocsikasznagynovakwesterhoffsnoep2010_model.cdh1",
        "description": "Cdh1. Maps to source symbol `Cdh1`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "cyca",
        "label": "Cyca",
        "maps_to": "physiology_cellml_conradie_bruggeman_ciliberto_csikasz_nagy_novak_conradiebruggemancilibertocsikasznagynovakwesterhoffsnoep2010_model.cyca",
        "description": "Cyca. Maps to source symbol `CYCA`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "cycb",
        "label": "Cycb",
        "maps_to": "physiology_cellml_conradie_bruggeman_ciliberto_csikasz_nagy_novak_conradiebruggemancilibertocsikasznagynovakwesterhoffsnoep2010_model.cycb",
        "description": "Cycb. Maps to source symbol `CYCB`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "cycd",
        "label": "Cycd",
        "maps_to": "physiology_cellml_conradie_bruggeman_ciliberto_csikasz_nagy_novak_conradiebruggemancilibertocsikasznagynovakwesterhoffsnoep2010_model.cycd",
        "description": "Cycd. Maps to source symbol `CYCD`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
      }
    ]
  },
  "title": "Conradie2010 - Cell Cycle Lab",
  "models": [
    {
      "path": "owned/models/physiology_cellml_conradie_bruggeman_ciliberto_csikasz_nagy_novak_conradiebruggemancilibertocsikasznagynovakwesterhoffsnoep2010_model",
      "alias": "physiology_cellml_conradie_bruggeman_ciliberto_csikasz_nagy_novak_conradiebruggemancilibertocsikasznagynovakwesterhoffsnoep2010_model",
      "parameters": {
        "model_path": "data/conradie_2010.cellml",
        "integration_step": 0.01
      },
      "provenance": {
        "owned_path": "owned/models/physiology_cellml_conradie_bruggeman_ciliberto_csikasz_nagy_novak_conradiebruggemancilibertocsikasznagynovakwesterhoffsnoep2010_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.physiology_cellml_conradie_bruggeman_ciliberto_csikasz_nagy_novak_conradiebruggemancilibertocsikasznagynovakwesterhoffsnoep2010_model_state"
      ],
      "from": "physiology_cellml_conradie_bruggeman_ciliberto_csikasz_nagy_novak_conradiebruggemancilibertocsikasznagynovakwesterhoffsnoep2010_model.state"
    },
    {
      "to": [
        "visualisation.physiology_cellml_conradie_bruggeman_ciliberto_csikasz_nagy_novak_conradiebruggemancilibertocsikasznagynovakwesterhoffsnoep2010_model_summary"
      ],
      "from": "physiology_cellml_conradie_bruggeman_ciliberto_csikasz_nagy_novak_conradiebruggemancilibertocsikasznagynovakwesterhoffsnoep2010_model.summary"
    },
    {
      "to": [
        "visualisation.physiology_cellml_conradie_bruggeman_ciliberto_csikasz_nagy_novak_conradiebruggemancilibertocsikasznagynovakwesterhoffsnoep2010_model_trajectory"
      ],
      "from": "physiology_cellml_conradie_bruggeman_ciliberto_csikasz_nagy_novak_conradiebruggemancilibertocsikasznagynovakwesterhoffsnoep2010_model.trajectory"
    },
    {
      "to": [
        "visualisation.physiology_cellml_conradie_bruggeman_ciliberto_csikasz_nagy_novak_conradiebruggemancilibertocsikasznagynovakwesterhoffsnoep2010_model_variable_labels"
      ],
      "from": "physiology_cellml_conradie_bruggeman_ciliberto_csikasz_nagy_novak_conradiebruggemancilibertocsikasznagynovakwesterhoffsnoep2010_model.variable_labels"
    }
  ],
  "runtime": {
    "duration": 0.01,
    "settle_steps": 1,
    "initial_inputs": {},
    "communication_step": 0.01
  },
  "description": "Source-faithful physiology lab for Conradie, Bruggeman, Ciliberto, Csikasz-Nagy, Novak, Westerhoff and Snoep, 2010. Public controls and outputs are mapped to real source symbols for calcium handling.",
  "schema_version": "2.0"
}