Goldbeter1995 - Albert Circadian Oscillations Drosophila Period Protein Lab

{
  "io": {
    "inputs": [
      {
        "name": "initial_per_m_rna",
        "label": "Initial Per M RNA",
        "maps_to": "physiology_cellml_goldbeter_1995_goldbeter1995_model.initial_per_m_rna",
        "description": "Initial value for Per M RNA. Maps to source symbol `M`. Units: micromolar. Naming evidence: source metadata names `M` as `per mRNA`.",
        "accepted_units": [
          "micromolar"
        ]
      },
      {
        "name": "initial_per_protein",
        "label": "Initial Per Protein",
        "maps_to": "physiology_cellml_goldbeter_1995_goldbeter1995_model.initial_per_protein",
        "description": "Initial value for Per Protein. Maps to source symbol `P0`. Units: micromolar. Naming evidence: source metadata names `P0` as `PER protein`.",
        "accepted_units": [
          "micromolar"
        ]
      }
    ],
    "outputs": [
      {
        "name": "state",
        "label": "Selected Source State",
        "maps_to": "physiology_cellml_goldbeter_1995_goldbeter1995_model.state"
      },
      {
        "name": "summary",
        "label": "Simulation Summary",
        "maps_to": "physiology_cellml_goldbeter_1995_goldbeter1995_model.summary"
      },
      {
        "name": "trajectory",
        "label": "Source Trajectory",
        "maps_to": "physiology_cellml_goldbeter_1995_goldbeter1995_model.trajectory"
      },
      {
        "name": "variable_labels",
        "label": "Observable Labels",
        "maps_to": "physiology_cellml_goldbeter_1995_goldbeter1995_model.variable_labels"
      },
      {
        "name": "intracellular_potassium_concentration",
        "label": "Intracellular Potassium Concentration",
        "maps_to": "physiology_cellml_goldbeter_1995_goldbeter1995_model.intracellular_potassium_concentration",
        "description": "Intracellular Potassium Concentration. Maps to source symbol `KI`. Units: micromolar. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "per_m_rna",
        "label": "Per M RNA",
        "maps_to": "physiology_cellml_goldbeter_1995_goldbeter1995_model.per_m_rna",
        "description": "Per M RNA. Maps to source symbol `M`. Units: micromolar. Naming evidence: source metadata names `M` as `per mRNA`."
      },
      {
        "name": "per_protein",
        "label": "Per Protein",
        "maps_to": "physiology_cellml_goldbeter_1995_goldbeter1995_model.per_protein",
        "description": "Per Protein. Maps to source symbol `P0`. Units: micromolar. Naming evidence: source metadata names `P0` as `PER protein`."
      },
      {
        "name": "phosphorylated_per_protein",
        "label": "Phosphorylated Per Protein",
        "maps_to": "physiology_cellml_goldbeter_1995_goldbeter1995_model.phosphorylated_per_protein",
        "description": "Phosphorylated Per Protein. Maps to source symbol `P1`. Units: micromolar. Naming evidence: source metadata names `P1` as `phosphorylated PER protein`."
      },
      {
        "name": "bisphosphorylated_per_protein",
        "label": "Bisphosphorylated Per Protein",
        "maps_to": "physiology_cellml_goldbeter_1995_goldbeter1995_model.bisphosphorylated_per_protein",
        "description": "Bisphosphorylated Per Protein. Maps to source symbol `P2`. Units: micromolar. Naming evidence: source metadata names `P2` as `bisphosphorylated PER protein`."
      },
      {
        "name": "nuclear_bisphosphorylated_per_protein",
        "label": "Nuclear Bisphosphorylated Per Protein",
        "maps_to": "physiology_cellml_goldbeter_1995_goldbeter1995_model.nuclear_bisphosphorylated_per_protein",
        "description": "Nuclear Bisphosphorylated Per Protein. Maps to source symbol `PN`. Units: micromolar. Naming evidence: source metadata names `PN` as `nuclear bisphosphorylated PER protein`."
      }
    ]
  },
  "title": "Goldbeter1995 - Albert Circadian Oscillations Drosophila Period Protein Lab",
  "models": [
    {
      "path": "owned/models/physiology_cellml_goldbeter_1995_goldbeter1995_model",
      "alias": "physiology_cellml_goldbeter_1995_goldbeter1995_model",
      "parameters": {
        "model_path": "data/goldbeter_1995.cellml",
        "integration_step": 0.01
      },
      "provenance": {
        "owned_path": "owned/models/physiology_cellml_goldbeter_1995_goldbeter1995_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.physiology_cellml_goldbeter_1995_goldbeter1995_model_state"
      ],
      "from": "physiology_cellml_goldbeter_1995_goldbeter1995_model.state"
    },
    {
      "to": [
        "visualisation.physiology_cellml_goldbeter_1995_goldbeter1995_model_summary"
      ],
      "from": "physiology_cellml_goldbeter_1995_goldbeter1995_model.summary"
    },
    {
      "to": [
        "visualisation.physiology_cellml_goldbeter_1995_goldbeter1995_model_trajectory"
      ],
      "from": "physiology_cellml_goldbeter_1995_goldbeter1995_model.trajectory"
    },
    {
      "to": [
        "visualisation.physiology_cellml_goldbeter_1995_goldbeter1995_model_variable_labels"
      ],
      "from": "physiology_cellml_goldbeter_1995_goldbeter1995_model.variable_labels"
    }
  ],
  "runtime": {
    "duration": 0.01,
    "settle_steps": 1,
    "initial_inputs": {},
    "communication_step": 0.01
  },
  "description": "Source-faithful physiology lab for Goldbeter, 1995. Public controls and outputs are mapped to real source symbols for oscillatory physiology.",
  "schema_version": "2.0"
}