About lab
Systems Biology Emiola2016Crosstalk Between The Lipopolysacchar Model1601080000Model captures core biological behavior in the context of systemsbiology, sbml, biomodels_ebi using a biomodels_ebi-sourced OTHER m. When you run it, you can observe state and evaluate how the modeled system changes across runs.
Runtime
Duration1
Comms Step0.1
Runs
Total0
Completed0
Failed0
Metadata
Packageemiola2016-crosstalk-between-the-lipopolysaccharide-and-phosphol
Created2026-05-17
Updated2026-05-17
systemsbiologysbmlbiomodels_ebifaithfulcuratedvisualisation
Manifest
{
"io": {
"inputs": [
{
"name": "initial_promoter_lpx_c",
"label": "Initial Promoter Lpx C",
"maps_to": "systemsbiology_sbml_emiola2016_crosstalk_between_the_lipopolysacchar_model1601080000_model.initial_promoter_lpx_c",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `promoter_LpxC`."
},
{
"name": "initial_promoter_kdt_a",
"label": "Initial Promoter Kdt A",
"maps_to": "systemsbiology_sbml_emiola2016_crosstalk_between_the_lipopolysacchar_model1601080000_model.initial_promoter_kdt_a",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `promoter_KdtA`."
},
{
"name": "initial_acetyl_co_a",
"label": "Initial Acetyl Co A",
"maps_to": "systemsbiology_sbml_emiola2016_crosstalk_between_the_lipopolysacchar_model1601080000_model.initial_acetyl_co_a",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `acetyl_CoA`."
},
{
"name": "initial_udp_glc_nac",
"label": "Initial Udp Glc Nac",
"maps_to": "systemsbiology_sbml_emiola2016_crosstalk_between_the_lipopolysacchar_model1601080000_model.initial_udp_glc_nac",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `UDP_GlcNac`."
},
{
"name": "initial_cmp_kdo",
"label": "Initial Cmp Kdo",
"maps_to": "systemsbiology_sbml_emiola2016_crosstalk_between_the_lipopolysacchar_model1601080000_model.initial_cmp_kdo",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `CMP_KDO`."
},
{
"name": "initial_fad_r",
"label": "Initial Fad R",
"maps_to": "systemsbiology_sbml_emiola2016_crosstalk_between_the_lipopolysacchar_model1601080000_model.initial_fad_r",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `FadR_0`."
}
],
"outputs": [
{
"name": "state",
"maps_to": "systemsbiology_sbml_emiola2016_crosstalk_between_the_lipopolysacchar_model1601080000_model.state"
},
{
"name": "summary",
"maps_to": "systemsbiology_sbml_emiola2016_crosstalk_between_the_lipopolysacchar_model1601080000_model.summary"
},
{
"name": "species_labels",
"maps_to": "systemsbiology_sbml_emiola2016_crosstalk_between_the_lipopolysacchar_model1601080000_model.species_labels"
},
{
"name": "promoter_lpx_c",
"maps_to": "systemsbiology_sbml_emiola2016_crosstalk_between_the_lipopolysacchar_model1601080000_model.promoter_lpx_c"
},
{
"name": "promoter_kdt_a",
"maps_to": "systemsbiology_sbml_emiola2016_crosstalk_between_the_lipopolysacchar_model1601080000_model.promoter_kdt_a"
},
{
"name": "acetyl_co_a",
"maps_to": "systemsbiology_sbml_emiola2016_crosstalk_between_the_lipopolysacchar_model1601080000_model.acetyl_co_a"
},
{
"name": "udp_glc_nac",
"maps_to": "systemsbiology_sbml_emiola2016_crosstalk_between_the_lipopolysacchar_model1601080000_model.udp_glc_nac"
},
{
"name": "cmp_kdo",
"maps_to": "systemsbiology_sbml_emiola2016_crosstalk_between_the_lipopolysacchar_model1601080000_model.cmp_kdo"
},
{
"name": "fad_r",
"maps_to": "systemsbiology_sbml_emiola2016_crosstalk_between_the_lipopolysacchar_model1601080000_model.fad_r"
}
]
},
"tags": [
"systemsbiology",
"sbml",
"biomodels_ebi",
"faithful",
"curated"
],
"title": "Emiola2016 Crosstalk Between The Lipopolysaccharide And Phospholipid Lab",
"models": [
{
"path": "owned/models/systemsbiology_sbml_emiola2016_crosstalk_between_the_lipopolysacchar_model1601080000_model",
"alias": "systemsbiology_sbml_emiola2016_crosstalk_between_the_lipopolysacchar_model1601080000_model",
"provenance": {
"owned_path": "owned/models/systemsbiology_sbml_emiola2016_crosstalk_between_the_lipopolysacchar_model1601080000_model"
}
},
{
"path": "owned/models/visualisation",
"alias": "visualisation",
"provenance": {
"owned_path": "owned/models/visualisation"
}
}
],
"wiring": [
{
"to": [
"visualisation.systemsbiology_sbml_emiola2016_crosstalk_between_the_lipopolysacchar_model1601080000_model_state"
],
"from": "systemsbiology_sbml_emiola2016_crosstalk_between_the_lipopolysacchar_model1601080000_model.state"
},
{
"to": [
"visualisation.systemsbiology_sbml_emiola2016_crosstalk_between_the_lipopolysacchar_model1601080000_model_summary"
],
"from": "systemsbiology_sbml_emiola2016_crosstalk_between_the_lipopolysacchar_model1601080000_model.summary"
},
{
"to": [
"visualisation.systemsbiology_sbml_emiola2016_crosstalk_between_the_lipopolysacchar_model1601080000_model_species_labels"
],
"from": "systemsbiology_sbml_emiola2016_crosstalk_between_the_lipopolysacchar_model1601080000_model.species_labels"
}
],
"runtime": {
"duration": 1,
"initial_inputs": {},
"communication_step": 0.1
},
"description": "Systems Biology Emiola2016Crosstalk Between The Lipopolysacchar Model1601080000Model captures core biological behavior in the context of systemsbiology, sbml, biomodels_ebi using a biomodels_ebi-sourced OTHER m. When you run it, you can observe state and evaluate how the modeled system changes across runs.",
"schema_version": "2.0"
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