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Emiola2016 Crosstalk Between The Lipopolysaccharide And Phospholipid Lab

About lab

Systems Biology Emiola2016Crosstalk Between The Lipopolysacchar Model1601080000Model captures core biological behavior in the context of systemsbiology, sbml, biomodels_ebi using a biomodels_ebi-sourced OTHER m. When you run it, you can observe state and evaluate how the modeled system changes across runs.

Runtime

Duration1
Comms Step0.1

Runs

Total0
Completed0
Failed0

Metadata

Packageemiola2016-crosstalk-between-the-lipopolysaccharide-and-phosphol
Created2026-05-17
Updated2026-05-17
systemsbiologysbmlbiomodels_ebifaithfulcuratedvisualisation

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_promoter_lpx_c",
        "label": "Initial Promoter Lpx C",
        "maps_to": "systemsbiology_sbml_emiola2016_crosstalk_between_the_lipopolysacchar_model1601080000_model.initial_promoter_lpx_c",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `promoter_LpxC`."
      },
      {
        "name": "initial_promoter_kdt_a",
        "label": "Initial Promoter Kdt A",
        "maps_to": "systemsbiology_sbml_emiola2016_crosstalk_between_the_lipopolysacchar_model1601080000_model.initial_promoter_kdt_a",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `promoter_KdtA`."
      },
      {
        "name": "initial_acetyl_co_a",
        "label": "Initial Acetyl Co A",
        "maps_to": "systemsbiology_sbml_emiola2016_crosstalk_between_the_lipopolysacchar_model1601080000_model.initial_acetyl_co_a",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `acetyl_CoA`."
      },
      {
        "name": "initial_udp_glc_nac",
        "label": "Initial Udp Glc Nac",
        "maps_to": "systemsbiology_sbml_emiola2016_crosstalk_between_the_lipopolysacchar_model1601080000_model.initial_udp_glc_nac",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `UDP_GlcNac`."
      },
      {
        "name": "initial_cmp_kdo",
        "label": "Initial Cmp Kdo",
        "maps_to": "systemsbiology_sbml_emiola2016_crosstalk_between_the_lipopolysacchar_model1601080000_model.initial_cmp_kdo",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `CMP_KDO`."
      },
      {
        "name": "initial_fad_r",
        "label": "Initial Fad R",
        "maps_to": "systemsbiology_sbml_emiola2016_crosstalk_between_the_lipopolysacchar_model1601080000_model.initial_fad_r",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `FadR_0`."
      }
    ],
    "outputs": [
      {
        "name": "state",
        "maps_to": "systemsbiology_sbml_emiola2016_crosstalk_between_the_lipopolysacchar_model1601080000_model.state"
      },
      {
        "name": "summary",
        "maps_to": "systemsbiology_sbml_emiola2016_crosstalk_between_the_lipopolysacchar_model1601080000_model.summary"
      },
      {
        "name": "species_labels",
        "maps_to": "systemsbiology_sbml_emiola2016_crosstalk_between_the_lipopolysacchar_model1601080000_model.species_labels"
      },
      {
        "name": "promoter_lpx_c",
        "maps_to": "systemsbiology_sbml_emiola2016_crosstalk_between_the_lipopolysacchar_model1601080000_model.promoter_lpx_c"
      },
      {
        "name": "promoter_kdt_a",
        "maps_to": "systemsbiology_sbml_emiola2016_crosstalk_between_the_lipopolysacchar_model1601080000_model.promoter_kdt_a"
      },
      {
        "name": "acetyl_co_a",
        "maps_to": "systemsbiology_sbml_emiola2016_crosstalk_between_the_lipopolysacchar_model1601080000_model.acetyl_co_a"
      },
      {
        "name": "udp_glc_nac",
        "maps_to": "systemsbiology_sbml_emiola2016_crosstalk_between_the_lipopolysacchar_model1601080000_model.udp_glc_nac"
      },
      {
        "name": "cmp_kdo",
        "maps_to": "systemsbiology_sbml_emiola2016_crosstalk_between_the_lipopolysacchar_model1601080000_model.cmp_kdo"
      },
      {
        "name": "fad_r",
        "maps_to": "systemsbiology_sbml_emiola2016_crosstalk_between_the_lipopolysacchar_model1601080000_model.fad_r"
      }
    ]
  },
  "tags": [
    "systemsbiology",
    "sbml",
    "biomodels_ebi",
    "faithful",
    "curated"
  ],
  "title": "Emiola2016 Crosstalk Between The Lipopolysaccharide And Phospholipid Lab",
  "models": [
    {
      "path": "owned/models/systemsbiology_sbml_emiola2016_crosstalk_between_the_lipopolysacchar_model1601080000_model",
      "alias": "systemsbiology_sbml_emiola2016_crosstalk_between_the_lipopolysacchar_model1601080000_model",
      "provenance": {
        "owned_path": "owned/models/systemsbiology_sbml_emiola2016_crosstalk_between_the_lipopolysacchar_model1601080000_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.systemsbiology_sbml_emiola2016_crosstalk_between_the_lipopolysacchar_model1601080000_model_state"
      ],
      "from": "systemsbiology_sbml_emiola2016_crosstalk_between_the_lipopolysacchar_model1601080000_model.state"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_emiola2016_crosstalk_between_the_lipopolysacchar_model1601080000_model_summary"
      ],
      "from": "systemsbiology_sbml_emiola2016_crosstalk_between_the_lipopolysacchar_model1601080000_model.summary"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_emiola2016_crosstalk_between_the_lipopolysacchar_model1601080000_model_species_labels"
      ],
      "from": "systemsbiology_sbml_emiola2016_crosstalk_between_the_lipopolysacchar_model1601080000_model.species_labels"
    }
  ],
  "runtime": {
    "duration": 1,
    "initial_inputs": {},
    "communication_step": 0.1
  },
  "description": "Systems Biology Emiola2016Crosstalk Between The Lipopolysacchar Model1601080000Model captures core biological behavior in the context of systemsbiology, sbml, biomodels_ebi using a biomodels_ebi-sourced OTHER m. When you run it, you can observe state and evaluate how the modeled system changes across runs.",
  "schema_version": "2.0"
}

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