About lab
Clean Biosimulant lab for cell-cycle regulatory signaling. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.
Runtime
Duration1
Comms Step0.1
Runs
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Completed0
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Metadata
Packagegoldbeter2013-oscillatory-activity-of-cyclin-dependent-kinases-i
Created2026-05-16
Updated2026-05-16
signalingsystemssystems-biologysbmlfaithfulbiomodels_ebicell-cycle-signalingvisualisation
Manifest
{
"io": {
"inputs": [
{
"name": "initial_cyclin",
"label": "Initial Cyclin",
"maps_to": "signaling_sbml_goldbeter2013_oscillatory_activity_of_cyclin_dep_biomd0000000944_model.initial_cyclin",
"description": "Initial level of Cyclin. Maps to SBML symbol `Cyclin`; exposed as a traceable initial-condition perturbation."
}
],
"outputs": [
{
"name": "active_cdc2_kinase",
"label": "active Cdc2 Kinase",
"maps_to": "signaling_sbml_goldbeter2013_oscillatory_activity_of_cyclin_dep_biomd0000000944_model.active_cdc2_kinase",
"description": "active Cdc2 Kinase. Maps to SBML symbol `Active_Cdc2_kinase` and is emitted in native SBML units."
},
{
"name": "active_apc",
"label": "active APC",
"maps_to": "signaling_sbml_goldbeter2013_oscillatory_activity_of_cyclin_dep_biomd0000000944_model.active_apc",
"description": "active APC. Maps to SBML symbol `Active_APC` and is emitted in native SBML units."
},
{
"name": "cyclin",
"label": "Cyclin",
"maps_to": "signaling_sbml_goldbeter2013_oscillatory_activity_of_cyclin_dep_biomd0000000944_model.cyclin",
"description": "Cyclin. Maps to SBML symbol `Cyclin` and is emitted in native SBML units."
},
{
"name": "state",
"label": "Observable state",
"maps_to": "signaling_sbml_goldbeter2013_oscillatory_activity_of_cyclin_dep_biomd0000000944_model.state"
},
{
"name": "summary",
"label": "Simulation summary",
"maps_to": "signaling_sbml_goldbeter2013_oscillatory_activity_of_cyclin_dep_biomd0000000944_model.summary"
},
{
"name": "species_labels",
"label": "Observable labels",
"maps_to": "signaling_sbml_goldbeter2013_oscillatory_activity_of_cyclin_dep_biomd0000000944_model.species_labels"
}
]
},
"tags": [
"signaling",
"systems",
"systems-biology",
"sbml",
"faithful",
"biomodels_ebi",
"cell-cycle-signaling"
],
"title": "Goldbeter2013-Oscillatory activity of cyclin-dependent kinases in the cell cycle Lab",
"models": [
{
"path": "owned/models/signaling_sbml_goldbeter2013_oscillatory_activity_of_cyclin_dep_biomd0000000944_model",
"alias": "signaling_sbml_goldbeter2013_oscillatory_activity_of_cyclin_dep_biomd0000000944_model",
"provenance": {
"owned_path": "owned/models/signaling_sbml_goldbeter2013_oscillatory_activity_of_cyclin_dep_biomd0000000944_model"
}
},
{
"path": "owned/models/visualisation",
"alias": "visualisation",
"provenance": {
"owned_path": "owned/models/visualisation"
}
}
],
"wiring": [
{
"to": [
"visualisation.signaling_sbml_goldbeter2013_oscillatory_activity_of_cyclin_dep_biomd0000000944_model_state"
],
"from": "signaling_sbml_goldbeter2013_oscillatory_activity_of_cyclin_dep_biomd0000000944_model.state"
},
{
"to": [
"visualisation.signaling_sbml_goldbeter2013_oscillatory_activity_of_cyclin_dep_biomd0000000944_model_summary"
],
"from": "signaling_sbml_goldbeter2013_oscillatory_activity_of_cyclin_dep_biomd0000000944_model.summary"
},
{
"to": [
"visualisation.signaling_sbml_goldbeter2013_oscillatory_activity_of_cyclin_dep_biomd0000000944_model_species_labels"
],
"from": "signaling_sbml_goldbeter2013_oscillatory_activity_of_cyclin_dep_biomd0000000944_model.species_labels"
}
],
"runtime": {
"duration": 1,
"initial_inputs": {},
"communication_step": 0.1
},
"description": "Clean Biosimulant lab for cell-cycle regulatory signaling. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.",
"schema_version": "2.0"
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