About lab
This is an updated version of a previous model that described the dynamics of cancer treatment, with descriptions of tumour cell numbers, specific and non-specific immune cells (NK, CD8+ T cells and o. It can be used to explore immune response dynamics and compare pathway-level behavior across conditions.
Runtime
Duration10
Comms Step1
Runs
Total0
Completed0
Failed0
Metadata
Packagedepillis2009-mathematical-model-creation-for-cancer-chemo-immuno
Created2026-05-15
Updated2026-05-15
immunologysbmlbiomodels_ebifaithfulcuratedvisualisation
Manifest
{
"io": {
"inputs": [
{
"name": "initial_chemotherapy_drug",
"label": "Initial Chemotherapy Drug",
"units": "native source value",
"default": 0,
"maps_to": "immunology_sbml_depillis2009_mathematical_model_creation_for_can_biomd0000000779_model.initial_chemotherapy_drug",
"description": "Initial Chemotherapy Drug. Sets the initial value of bundled SBML species `M_Chemotherapy_Drug`."
},
{
"name": "initial_unresolved_tumor_observable_1",
"label": "Initial Unresolved Tumor Observable 1",
"units": "native source value",
"default": 10000000,
"maps_to": "immunology_sbml_depillis2009_mathematical_model_creation_for_can_biomd0000000779_model.initial_unresolved_tumor_observable_1",
"description": "Initial Unresolved Tumor Observable 1. Sets the initial value of bundled SBML species `T_Tumour_Cells`."
},
{
"name": "initial_cd8_t_cells",
"label": "Initial CD8 T Cells",
"units": "native source value",
"default": 526800,
"maps_to": "immunology_sbml_depillis2009_mathematical_model_creation_for_can_biomd0000000779_model.initial_cd8_t_cells",
"description": "Initial CD8 T Cells. Sets the initial value of bundled SBML species `L_CD8_T_Cells`."
},
{
"name": "initial_interleukin_2",
"label": "Initial Interleukin 2",
"units": "native source value",
"default": 1073,
"maps_to": "immunology_sbml_depillis2009_mathematical_model_creation_for_can_biomd0000000779_model.initial_interleukin_2",
"description": "Initial Interleukin 2. Sets the initial value of bundled SBML species `I_IL_2`."
},
{
"name": "initial_natural_killer_cells",
"label": "Initial Natural Killer Cells",
"units": "native source value",
"default": 250000000,
"maps_to": "immunology_sbml_depillis2009_mathematical_model_creation_for_can_biomd0000000779_model.initial_natural_killer_cells",
"description": "Initial Natural Killer Cells. Sets the initial value of bundled SBML species `N_Natural_Killer_Cells`."
},
{
"name": "natural_killer_induced_tumour_death_rate",
"label": "Natural Killer Induced Tumour Death Rate",
"units": "native source value",
"default": 2.9077e-13,
"maps_to": "immunology_sbml_depillis2009_mathematical_model_creation_for_can_biomd0000000779_model.natural_killer_induced_tumour_death_rate",
"description": "Natural Killer Induced Tumour Death Rate. Sets bundled SBML parameter `c`."
}
],
"outputs": [
{
"name": "chemotherapy_drug",
"maps_to": "immunology_sbml_depillis2009_mathematical_model_creation_for_can_biomd0000000779_model.chemotherapy_drug"
},
{
"name": "unresolved_tumor_observable_1",
"maps_to": "immunology_sbml_depillis2009_mathematical_model_creation_for_can_biomd0000000779_model.unresolved_tumor_observable_1"
},
{
"name": "cd8_t_cells",
"maps_to": "immunology_sbml_depillis2009_mathematical_model_creation_for_can_biomd0000000779_model.cd8_t_cells"
},
{
"name": "interleukin_2",
"maps_to": "immunology_sbml_depillis2009_mathematical_model_creation_for_can_biomd0000000779_model.interleukin_2"
},
{
"name": "natural_killer_cells",
"maps_to": "immunology_sbml_depillis2009_mathematical_model_creation_for_can_biomd0000000779_model.natural_killer_cells"
},
{
"name": "state",
"maps_to": "immunology_sbml_depillis2009_mathematical_model_creation_for_can_biomd0000000779_model.state"
},
{
"name": "summary",
"maps_to": "immunology_sbml_depillis2009_mathematical_model_creation_for_can_biomd0000000779_model.summary"
},
{
"name": "species_labels",
"maps_to": "immunology_sbml_depillis2009_mathematical_model_creation_for_can_biomd0000000779_model.species_labels"
}
]
},
"title": "dePillis2009 - Mathematical model creation for cancer chemo-immunotherapy Lab",
"models": [
{
"path": "owned/models/immunology_sbml_depillis2009_mathematical_model_creation_for_can_biomd0000000779_model",
"alias": "immunology_sbml_depillis2009_mathematical_model_creation_for_can_biomd0000000779_model",
"provenance": {
"owned_path": "owned/models/immunology_sbml_depillis2009_mathematical_model_creation_for_can_biomd0000000779_model"
}
},
{
"path": "owned/models/visualisation",
"alias": "visualisation",
"provenance": {
"owned_path": "owned/models/visualisation"
}
}
],
"wiring": [
{
"to": [
"visualisation.immunology_sbml_depillis2009_mathematical_model_creation_for_can_biomd0000000779_model_state"
],
"from": "immunology_sbml_depillis2009_mathematical_model_creation_for_can_biomd0000000779_model.state"
},
{
"to": [
"visualisation.immunology_sbml_depillis2009_mathematical_model_creation_for_can_biomd0000000779_model_summary"
],
"from": "immunology_sbml_depillis2009_mathematical_model_creation_for_can_biomd0000000779_model.summary"
},
{
"to": [
"visualisation.immunology_sbml_depillis2009_mathematical_model_creation_for_can_biomd0000000779_model_species_labels"
],
"from": "immunology_sbml_depillis2009_mathematical_model_creation_for_can_biomd0000000779_model.species_labels"
}
],
"runtime": {
"duration": 10,
"initial_inputs": {},
"communication_step": 1
},
"description": "This is an updated version of a previous model that described the dynamics of cancer treatment, with descriptions of tumour cell numbers, specific and non-specific immune cells (NK, CD8+ T cells and o. It can be used to explore immune response dynamics and compare pathway-level behavior across conditions.",
"schema_version": "2.0"
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