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Cui2008 - Does Not Include Zinc Buffering Effects Tpen Lab

About lab

Source-faithful physiology lab for Cui, Kaandorp, Lloyd, 2008. Public controls and outputs are mapped to real source symbols for source-model physiology.

Runtime

Duration0.01
Comms Step0.01
Settle Steps1

Runs

Total0
Completed0
Failed0

Metadata

Packagecui2008-does-not-include-zinc-buffering-effects-tpen-lab
Created2026-05-23
Updated2026-05-23
physiologycellmlphysiomefaithfulvisualisationother

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_active_znt_r",
        "label": "Initial Active Znt R",
        "maps_to": "physiology_cellml_cui_kaandorp_lloyd_2008_cuikaandorplloyd2008_model.initial_active_znt_r",
        "description": "Initial value for Active Znt R. Maps to source symbol `Px1`. Units: nanomolar. Naming evidence: source metadata names `Px1` as `active ZntR`.",
        "accepted_units": [
          "nanomolar"
        ]
      },
      {
        "name": "initial_active_zur",
        "label": "Initial Active Zur",
        "maps_to": "physiology_cellml_cui_kaandorp_lloyd_2008_cuikaandorplloyd2008_model.initial_active_zur",
        "description": "Initial value for Active Zur. Maps to source symbol `Py1`. Units: nanomolar. Naming evidence: source metadata names `Py1` as `active Zur`.",
        "accepted_units": [
          "nanomolar"
        ]
      }
    ],
    "outputs": [
      {
        "name": "state",
        "label": "Selected Source State",
        "maps_to": "physiology_cellml_cui_kaandorp_lloyd_2008_cuikaandorplloyd2008_model.state"
      },
      {
        "name": "summary",
        "label": "Simulation Summary",
        "maps_to": "physiology_cellml_cui_kaandorp_lloyd_2008_cuikaandorplloyd2008_model.summary"
      },
      {
        "name": "trajectory",
        "label": "Source Trajectory",
        "maps_to": "physiology_cellml_cui_kaandorp_lloyd_2008_cuikaandorplloyd2008_model.trajectory"
      },
      {
        "name": "variable_labels",
        "label": "Observable Labels",
        "maps_to": "physiology_cellml_cui_kaandorp_lloyd_2008_cuikaandorplloyd2008_model.variable_labels"
      },
      {
        "name": "apo_znt_r",
        "label": "Apo Znt R",
        "maps_to": "physiology_cellml_cui_kaandorp_lloyd_2008_cuikaandorplloyd2008_model.apo_znt_r",
        "description": "Apo Znt R. Maps to source symbol `Px`. Units: nanomolar. Naming evidence: source metadata names `Px` as `apo-ZntR`."
      },
      {
        "name": "dna_of_znt_a",
        "label": "DNA Of Znt A",
        "maps_to": "physiology_cellml_cui_kaandorp_lloyd_2008_cuikaandorplloyd2008_model.dna_of_znt_a",
        "description": "DNA Of Znt A. Maps to source symbol `Dz`. Units: nanomolar. Naming evidence: source metadata names `Dz` as `DNA of ZntA`."
      },
      {
        "name": "dna_of_znu_c",
        "label": "DNA Of Znu C",
        "maps_to": "physiology_cellml_cui_kaandorp_lloyd_2008_cuikaandorplloyd2008_model.dna_of_znu_c",
        "description": "DNA Of Znu C. Maps to source symbol `Dw`. Units: nanomolar. Naming evidence: source metadata names `Dw` as `DNA of ZnuC`."
      },
      {
        "name": "m_rna_of_znu_c",
        "label": "M RNA Of Znu C",
        "maps_to": "physiology_cellml_cui_kaandorp_lloyd_2008_cuikaandorplloyd2008_model.m_rna_of_znu_c",
        "description": "M RNA Of Znu C. Maps to source symbol `Mw`. Units: nanomolar. Naming evidence: source metadata names `Mw` as `mRNA of ZnuC`."
      },
      {
        "name": "m_rna_of_znu_c_mz",
        "label": "M RNA Of Znu C Mz",
        "maps_to": "physiology_cellml_cui_kaandorp_lloyd_2008_cuikaandorplloyd2008_model.m_rna_of_znu_c_mz",
        "description": "M RNA Of Znu C Mz. Maps to source symbol `Mz`. Units: nanomolar. Naming evidence: source metadata names `Mz` as `mRNA of ZnuC`."
      },
      {
        "name": "zur_dimer_containing_one_zinc_ion_per_monomer",
        "label": "Zur Dimer Containing One Zinc Ion Per Monomer",
        "maps_to": "physiology_cellml_cui_kaandorp_lloyd_2008_cuikaandorplloyd2008_model.zur_dimer_containing_one_zinc_ion_per_monomer",
        "description": "Zur Dimer Containing One Zinc Ion Per Monomer. Maps to source symbol `Py`. Units: nanomolar. Naming evidence: source metadata names `Py` as `Zur dimer containing one zinc ion per monomer`."
      }
    ]
  },
  "title": "Cui2008 - Does Not Include Zinc Buffering Effects Tpen Lab",
  "models": [
    {
      "path": "owned/models/physiology_cellml_cui_kaandorp_lloyd_2008_cuikaandorplloyd2008_model",
      "alias": "physiology_cellml_cui_kaandorp_lloyd_2008_cuikaandorplloyd2008_model",
      "parameters": {
        "model_path": "data/cui_kaandorp_lloyd_2008_a.cellml",
        "integration_step": 0.01
      },
      "provenance": {
        "owned_path": "owned/models/physiology_cellml_cui_kaandorp_lloyd_2008_cuikaandorplloyd2008_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.physiology_cellml_cui_kaandorp_lloyd_2008_cuikaandorplloyd2008_model_state"
      ],
      "from": "physiology_cellml_cui_kaandorp_lloyd_2008_cuikaandorplloyd2008_model.state"
    },
    {
      "to": [
        "visualisation.physiology_cellml_cui_kaandorp_lloyd_2008_cuikaandorplloyd2008_model_summary"
      ],
      "from": "physiology_cellml_cui_kaandorp_lloyd_2008_cuikaandorplloyd2008_model.summary"
    },
    {
      "to": [
        "visualisation.physiology_cellml_cui_kaandorp_lloyd_2008_cuikaandorplloyd2008_model_trajectory"
      ],
      "from": "physiology_cellml_cui_kaandorp_lloyd_2008_cuikaandorplloyd2008_model.trajectory"
    },
    {
      "to": [
        "visualisation.physiology_cellml_cui_kaandorp_lloyd_2008_cuikaandorplloyd2008_model_variable_labels"
      ],
      "from": "physiology_cellml_cui_kaandorp_lloyd_2008_cuikaandorplloyd2008_model.variable_labels"
    }
  ],
  "runtime": {
    "duration": 0.01,
    "settle_steps": 1,
    "initial_inputs": {},
    "communication_step": 0.01
  },
  "description": "Source-faithful physiology lab for Cui, Kaandorp, Lloyd, 2008. Public controls and outputs are mapped to real source symbols for source-model physiology.",
  "schema_version": "2.0"
}

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