Hoefnagel2002 - Hoefnagel Starrenburg Martens Hugenholtz Kleereb Lab

{
  "io": {
    "inputs": [
      {
        "name": "initial_adenosine_triphosphate",
        "label": "Initial Adenosine Triphosphate",
        "maps_to": "physiology_cellml_hoefnagel_starrenburg_martens_hugenholtz_kleereb_hoefnagelstarrenburgmartenshugenholtzkleerebezemvanswambongerswesterhoffsnoep2002_model.initial_adenosine_triphosphate",
        "description": "Initial value for Adenosine Triphosphate. Maps to source symbol `ATP`. Units: millimolar. Naming evidence: source metadata names `ATP` as `adenosine triphosphate`.",
        "accepted_units": [
          "millimolar"
        ]
      },
      {
        "name": "initial_acetyl_coenzyme_a",
        "label": "Initial Acetyl Coenzyme A",
        "maps_to": "physiology_cellml_hoefnagel_starrenburg_martens_hugenholtz_kleereb_hoefnagelstarrenburgmartenshugenholtzkleerebezemvanswambongerswesterhoffsnoep2002_model.initial_acetyl_coenzyme_a",
        "description": "Initial value for Acetyl Coenzyme A. Maps to source symbol `ACCOA`. Units: millimolar. Naming evidence: source metadata names `ACCOA` as `acetyl coenzyme A`.",
        "accepted_units": [
          "millimolar"
        ]
      }
    ],
    "outputs": [
      {
        "name": "state",
        "label": "Selected Source State",
        "maps_to": "physiology_cellml_hoefnagel_starrenburg_martens_hugenholtz_kleereb_hoefnagelstarrenburgmartenshugenholtzkleerebezemvanswambongerswesterhoffsnoep2002_model.state"
      },
      {
        "name": "summary",
        "label": "Simulation Summary",
        "maps_to": "physiology_cellml_hoefnagel_starrenburg_martens_hugenholtz_kleereb_hoefnagelstarrenburgmartenshugenholtzkleerebezemvanswambongerswesterhoffsnoep2002_model.summary"
      },
      {
        "name": "trajectory",
        "label": "Source Trajectory",
        "maps_to": "physiology_cellml_hoefnagel_starrenburg_martens_hugenholtz_kleereb_hoefnagelstarrenburgmartenshugenholtzkleerebezemvanswambongerswesterhoffsnoep2002_model.trajectory"
      },
      {
        "name": "variable_labels",
        "label": "Observable Labels",
        "maps_to": "physiology_cellml_hoefnagel_starrenburg_martens_hugenholtz_kleereb_hoefnagelstarrenburgmartenshugenholtzkleerebezemvanswambongerswesterhoffsnoep2002_model.variable_labels"
      },
      {
        "name": "adenosine_triphosphate",
        "label": "Adenosine Triphosphate",
        "maps_to": "physiology_cellml_hoefnagel_starrenburg_martens_hugenholtz_kleereb_hoefnagelstarrenburgmartenshugenholtzkleerebezemvanswambongerswesterhoffsnoep2002_model.adenosine_triphosphate",
        "description": "Adenosine Triphosphate. Maps to source symbol `ATP`. Units: millimolar. Naming evidence: source metadata names `ATP` as `adenosine triphosphate`."
      },
      {
        "name": "intracellular_potassium",
        "label": "Intracellular Potassium",
        "maps_to": "physiology_cellml_hoefnagel_starrenburg_martens_hugenholtz_kleereb_hoefnagelstarrenburgmartenshugenholtzkleerebezemvanswambongerswesterhoffsnoep2002_model.intracellular_potassium",
        "description": "Intracellular Potassium. Maps to source symbol `Ki`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "glucose",
        "label": "Glucose",
        "maps_to": "physiology_cellml_hoefnagel_starrenburg_martens_hugenholtz_kleereb_hoefnagelstarrenburgmartenshugenholtzkleerebezemvanswambongerswesterhoffsnoep2002_model.glucose",
        "description": "Glucose. Maps to source symbol `GLC`. Units: millimolar. Naming evidence: source metadata names `GLC` as `glucose`."
      },
      {
        "name": "km_atp",
        "label": "Km ATP",
        "maps_to": "physiology_cellml_hoefnagel_starrenburg_martens_hugenholtz_kleereb_hoefnagelstarrenburgmartenshugenholtzkleerebezemvanswambongerswesterhoffsnoep2002_model.km_atp",
        "description": "Km ATP. Maps to source symbol `Km_ATP`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "v_atpase_max",
        "label": "V Atpase Max",
        "maps_to": "physiology_cellml_hoefnagel_starrenburg_martens_hugenholtz_kleereb_hoefnagelstarrenburgmartenshugenholtzkleerebezemvanswambongerswesterhoffsnoep2002_model.v_atpase_max",
        "description": "V Atpase Max. Maps to source symbol `V_ATPase_max`. Units: flux. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "v_atpase_n",
        "label": "V Atpase N",
        "maps_to": "physiology_cellml_hoefnagel_starrenburg_martens_hugenholtz_kleereb_hoefnagelstarrenburgmartenshugenholtzkleerebezemvanswambongerswesterhoffsnoep2002_model.v_atpase_n",
        "description": "V Atpase N. Maps to source symbol `N`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
      }
    ]
  },
  "title": "Hoefnagel2002 - Hoefnagel Starrenburg Martens Hugenholtz Kleereb Lab",
  "models": [
    {
      "path": "owned/models/physiology_cellml_hoefnagel_starrenburg_martens_hugenholtz_kleereb_hoefnagelstarrenburgmartenshugenholtzkleerebezemvanswambongerswesterhoffsnoep2002_model",
      "alias": "physiology_cellml_hoefnagel_starrenburg_martens_hugenholtz_kleereb_hoefnagelstarrenburgmartenshugenholtzkleerebezemvanswambongerswesterhoffsnoep2002_model",
      "parameters": {
        "model_path": "data/hoefnagel_starrenburg_martens_hugenholtz_kleerebezem_vanswam_bongers_westerhoff_snoep_2002.cellml",
        "integration_step": 0.01
      },
      "provenance": {
        "owned_path": "owned/models/physiology_cellml_hoefnagel_starrenburg_martens_hugenholtz_kleereb_hoefnagelstarrenburgmartenshugenholtzkleerebezemvanswambongerswesterhoffsnoep2002_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.physiology_cellml_hoefnagel_starrenburg_martens_hugenholtz_kleereb_hoefnagelstarrenburgmartenshugenholtzkleerebezemvanswambongerswesterhoffsnoep2002_model_state"
      ],
      "from": "physiology_cellml_hoefnagel_starrenburg_martens_hugenholtz_kleereb_hoefnagelstarrenburgmartenshugenholtzkleerebezemvanswambongerswesterhoffsnoep2002_model.state"
    },
    {
      "to": [
        "visualisation.physiology_cellml_hoefnagel_starrenburg_martens_hugenholtz_kleereb_hoefnagelstarrenburgmartenshugenholtzkleerebezemvanswambongerswesterhoffsnoep2002_model_summary"
      ],
      "from": "physiology_cellml_hoefnagel_starrenburg_martens_hugenholtz_kleereb_hoefnagelstarrenburgmartenshugenholtzkleerebezemvanswambongerswesterhoffsnoep2002_model.summary"
    },
    {
      "to": [
        "visualisation.physiology_cellml_hoefnagel_starrenburg_martens_hugenholtz_kleereb_hoefnagelstarrenburgmartenshugenholtzkleerebezemvanswambongerswesterhoffsnoep2002_model_trajectory"
      ],
      "from": "physiology_cellml_hoefnagel_starrenburg_martens_hugenholtz_kleereb_hoefnagelstarrenburgmartenshugenholtzkleerebezemvanswambongerswesterhoffsnoep2002_model.trajectory"
    },
    {
      "to": [
        "visualisation.physiology_cellml_hoefnagel_starrenburg_martens_hugenholtz_kleereb_hoefnagelstarrenburgmartenshugenholtzkleerebezemvanswambongerswesterhoffsnoep2002_model_variable_labels"
      ],
      "from": "physiology_cellml_hoefnagel_starrenburg_martens_hugenholtz_kleereb_hoefnagelstarrenburgmartenshugenholtzkleerebezemvanswambongerswesterhoffsnoep2002_model.variable_labels"
    }
  ],
  "runtime": {
    "duration": 0.01,
    "settle_steps": 1,
    "initial_inputs": {},
    "communication_step": 0.01
  },
  "description": "Source-faithful physiology lab for Hoefnagel, Starrenburg, Martens, Hugenholtz, Kleerebezem, Vanswam, Bongers, Westerhoff, Snoep, 2002. Public controls and outputs are mapped to real source symbols for source-model physiology.",
  "schema_version": "2.0"
}