About lab
Clean Biosimulant lab for MAPK/ERK receptor signaling. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.
Runtime
Duration1
Comms Step0.1
Runs
Total0
Completed0
Failed0
Metadata
Packagestarbuck1990-egf-binding-and-trafficking-dynamics-in-fibroblast
Created2026-05-16
Updated2026-05-16
signalingsystemssystems-biologysbmlfaithfulbiomodels_ebiegfrgpcrvisualisation
Manifest
{
"io": {
"inputs": [
{
"name": "initial_source_defined_lo_state",
"label": "Initial source-defined LO state",
"maps_to": "signaling_sbml_starbuck1990_egf_binding_and_trafficking_dynamic_model2003190005_model.initial_source_defined_lo_state",
"description": "Initial level of source-defined LO state. Maps to SBML symbol `Lo`; exposed as a traceable initial-condition perturbation."
}
],
"outputs": [
{
"name": "source_defined_rii_state",
"label": "source-defined RII state",
"maps_to": "signaling_sbml_starbuck1990_egf_binding_and_trafficking_dynamic_model2003190005_model.source_defined_rii_state",
"description": "source-defined RII state. Maps to SBML symbol `Rii` and is emitted in native SBML units."
},
{
"name": "source_defined_ric_state",
"label": "source-defined RIC state",
"maps_to": "signaling_sbml_starbuck1990_egf_binding_and_trafficking_dynamic_model2003190005_model.source_defined_ric_state",
"description": "source-defined RIC state. Maps to SBML symbol `Ric` and is emitted in native SBML units."
},
{
"name": "source_defined_lii_state",
"label": "source-defined LII state",
"maps_to": "signaling_sbml_starbuck1990_egf_binding_and_trafficking_dynamic_model2003190005_model.source_defined_lii_state",
"description": "source-defined LII state. Maps to SBML symbol `Lii` and is emitted in native SBML units."
},
{
"name": "state",
"label": "Observable state",
"maps_to": "signaling_sbml_starbuck1990_egf_binding_and_trafficking_dynamic_model2003190005_model.state"
},
{
"name": "summary",
"label": "Simulation summary",
"maps_to": "signaling_sbml_starbuck1990_egf_binding_and_trafficking_dynamic_model2003190005_model.summary"
},
{
"name": "species_labels",
"label": "Observable labels",
"maps_to": "signaling_sbml_starbuck1990_egf_binding_and_trafficking_dynamic_model2003190005_model.species_labels"
}
]
},
"tags": [
"signaling",
"systems",
"systems-biology",
"sbml",
"faithful",
"biomodels_ebi",
"egfr",
"gpcr"
],
"title": "Starbuck1990 - EGF binding and trafficking dynamics in Fibroblast Lab",
"models": [
{
"path": "owned/models/signaling_sbml_starbuck1990_egf_binding_and_trafficking_dynamic_model2003190005_model",
"alias": "signaling_sbml_starbuck1990_egf_binding_and_trafficking_dynamic_model2003190005_model",
"provenance": {
"owned_path": "owned/models/signaling_sbml_starbuck1990_egf_binding_and_trafficking_dynamic_model2003190005_model"
}
},
{
"path": "owned/models/visualisation",
"alias": "visualisation",
"provenance": {
"owned_path": "owned/models/visualisation"
}
}
],
"wiring": [
{
"to": [
"visualisation.signaling_sbml_starbuck1990_egf_binding_and_trafficking_dynamic_model2003190005_model_state"
],
"from": "signaling_sbml_starbuck1990_egf_binding_and_trafficking_dynamic_model2003190005_model.state"
},
{
"to": [
"visualisation.signaling_sbml_starbuck1990_egf_binding_and_trafficking_dynamic_model2003190005_model_summary"
],
"from": "signaling_sbml_starbuck1990_egf_binding_and_trafficking_dynamic_model2003190005_model.summary"
},
{
"to": [
"visualisation.signaling_sbml_starbuck1990_egf_binding_and_trafficking_dynamic_model2003190005_model_species_labels"
],
"from": "signaling_sbml_starbuck1990_egf_binding_and_trafficking_dynamic_model2003190005_model.species_labels"
}
],
"runtime": {
"duration": 1,
"initial_inputs": {},
"communication_step": 0.1
},
"description": "Clean Biosimulant lab for MAPK/ERK receptor signaling. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.",
"schema_version": "2.0"
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