About lab
Clean Biosimulant lab for systems signaling model: Bertram2006_Endothelin. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.
Runtime
Duration1
Comms Step0.1
Runs
Total0
Completed0
Failed0
Metadata
Packagebertram2006-endothelin-lab
Created2026-05-16
Updated2026-05-16
signalingsystemssystems-biologysbmlfaithfulbiomodels_ebigpcrhormone-signalingphysiologyvisualisation
Manifest
{
"io": {
"inputs": [
{
"name": "initial_c_amplow_level",
"label": "C Amplow",
"maps_to": "signaling_sbml_bertram2006_endothelin_biomd0000000128_model.initial_c_amplow_level",
"description": "C Amplow source parameter. Maps to SBML symbol `cAMPlow` and preserves the bundled default."
},
{
"name": "initial_cytosolic_calcium_concentration",
"label": "Initial cytosolic Calcium Concentration",
"maps_to": "signaling_sbml_bertram2006_endothelin_biomd0000000128_model.initial_cytosolic_calcium_concentration",
"description": "Initial level of cytosolic Calcium Concentration. Maps to SBML symbol `c`; exposed as a traceable initial-condition perturbation."
},
{
"name": "initial_er_calcium_concentration",
"label": "Initial ER Calcium Concentration",
"maps_to": "signaling_sbml_bertram2006_endothelin_biomd0000000128_model.initial_er_calcium_concentration",
"description": "Initial level of ER Calcium Concentration. Maps to SBML symbol `cer`; exposed as a traceable initial-condition perturbation."
}
],
"outputs": [
{
"name": "cytosolic_calcium_concentration",
"label": "cytosolic Calcium Concentration",
"maps_to": "signaling_sbml_bertram2006_endothelin_biomd0000000128_model.cytosolic_calcium_concentration",
"description": "cytosolic Calcium Concentration. Maps to SBML symbol `c` and is emitted in native SBML units."
},
{
"name": "er_calcium_concentration",
"label": "ER Calcium Concentration",
"maps_to": "signaling_sbml_bertram2006_endothelin_biomd0000000128_model.er_calcium_concentration",
"description": "ER Calcium Concentration. Maps to SBML symbol `cer` and is emitted in native SBML units."
},
{
"name": "camp",
"label": "cAMP",
"maps_to": "signaling_sbml_bertram2006_endothelin_biomd0000000128_model.camp",
"description": "cAMP. Maps to SBML symbol `cAMP` and is emitted in native SBML units."
},
{
"name": "state",
"label": "Observable state",
"maps_to": "signaling_sbml_bertram2006_endothelin_biomd0000000128_model.state"
},
{
"name": "summary",
"label": "Simulation summary",
"maps_to": "signaling_sbml_bertram2006_endothelin_biomd0000000128_model.summary"
},
{
"name": "species_labels",
"label": "Observable labels",
"maps_to": "signaling_sbml_bertram2006_endothelin_biomd0000000128_model.species_labels"
}
]
},
"tags": [
"signaling",
"systems",
"systems-biology",
"sbml",
"faithful",
"biomodels_ebi",
"gpcr",
"hormone-signaling",
"physiology"
],
"title": "Bertram2006_Endothelin Lab",
"models": [
{
"path": "owned/models/signaling_sbml_bertram2006_endothelin_biomd0000000128_model",
"alias": "signaling_sbml_bertram2006_endothelin_biomd0000000128_model",
"provenance": {
"owned_path": "owned/models/signaling_sbml_bertram2006_endothelin_biomd0000000128_model"
}
},
{
"path": "owned/models/visualisation",
"alias": "visualisation",
"provenance": {
"owned_path": "owned/models/visualisation"
}
}
],
"wiring": [
{
"to": [
"visualisation.signaling_sbml_bertram2006_endothelin_biomd0000000128_model_state"
],
"from": "signaling_sbml_bertram2006_endothelin_biomd0000000128_model.state"
},
{
"to": [
"visualisation.signaling_sbml_bertram2006_endothelin_biomd0000000128_model_summary"
],
"from": "signaling_sbml_bertram2006_endothelin_biomd0000000128_model.summary"
},
{
"to": [
"visualisation.signaling_sbml_bertram2006_endothelin_biomd0000000128_model_species_labels"
],
"from": "signaling_sbml_bertram2006_endothelin_biomd0000000128_model.species_labels"
}
],
"runtime": {
"duration": 1,
"initial_inputs": {},
"communication_step": 0.1
},
"description": "Clean Biosimulant lab for systems signaling model: Bertram2006_Endothelin. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.",
"schema_version": "2.0"
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