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Bertram2006_Endothelin Lab

About lab

Clean Biosimulant lab for systems signaling model: Bertram2006_Endothelin. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.

Runtime

Duration1
Comms Step0.1

Runs

Total0
Completed0
Failed0

Metadata

Packagebertram2006-endothelin-lab
Created2026-05-16
Updated2026-05-16
signalingsystemssystems-biologysbmlfaithfulbiomodels_ebigpcrhormone-signalingphysiologyvisualisation

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_c_amplow_level",
        "label": "C Amplow",
        "maps_to": "signaling_sbml_bertram2006_endothelin_biomd0000000128_model.initial_c_amplow_level",
        "description": "C Amplow source parameter. Maps to SBML symbol `cAMPlow` and preserves the bundled default."
      },
      {
        "name": "initial_cytosolic_calcium_concentration",
        "label": "Initial cytosolic Calcium Concentration",
        "maps_to": "signaling_sbml_bertram2006_endothelin_biomd0000000128_model.initial_cytosolic_calcium_concentration",
        "description": "Initial level of cytosolic Calcium Concentration. Maps to SBML symbol `c`; exposed as a traceable initial-condition perturbation."
      },
      {
        "name": "initial_er_calcium_concentration",
        "label": "Initial ER Calcium Concentration",
        "maps_to": "signaling_sbml_bertram2006_endothelin_biomd0000000128_model.initial_er_calcium_concentration",
        "description": "Initial level of ER Calcium Concentration. Maps to SBML symbol `cer`; exposed as a traceable initial-condition perturbation."
      }
    ],
    "outputs": [
      {
        "name": "cytosolic_calcium_concentration",
        "label": "cytosolic Calcium Concentration",
        "maps_to": "signaling_sbml_bertram2006_endothelin_biomd0000000128_model.cytosolic_calcium_concentration",
        "description": "cytosolic Calcium Concentration. Maps to SBML symbol `c` and is emitted in native SBML units."
      },
      {
        "name": "er_calcium_concentration",
        "label": "ER Calcium Concentration",
        "maps_to": "signaling_sbml_bertram2006_endothelin_biomd0000000128_model.er_calcium_concentration",
        "description": "ER Calcium Concentration. Maps to SBML symbol `cer` and is emitted in native SBML units."
      },
      {
        "name": "camp",
        "label": "cAMP",
        "maps_to": "signaling_sbml_bertram2006_endothelin_biomd0000000128_model.camp",
        "description": "cAMP. Maps to SBML symbol `cAMP` and is emitted in native SBML units."
      },
      {
        "name": "state",
        "label": "Observable state",
        "maps_to": "signaling_sbml_bertram2006_endothelin_biomd0000000128_model.state"
      },
      {
        "name": "summary",
        "label": "Simulation summary",
        "maps_to": "signaling_sbml_bertram2006_endothelin_biomd0000000128_model.summary"
      },
      {
        "name": "species_labels",
        "label": "Observable labels",
        "maps_to": "signaling_sbml_bertram2006_endothelin_biomd0000000128_model.species_labels"
      }
    ]
  },
  "tags": [
    "signaling",
    "systems",
    "systems-biology",
    "sbml",
    "faithful",
    "biomodels_ebi",
    "gpcr",
    "hormone-signaling",
    "physiology"
  ],
  "title": "Bertram2006_Endothelin Lab",
  "models": [
    {
      "path": "owned/models/signaling_sbml_bertram2006_endothelin_biomd0000000128_model",
      "alias": "signaling_sbml_bertram2006_endothelin_biomd0000000128_model",
      "provenance": {
        "owned_path": "owned/models/signaling_sbml_bertram2006_endothelin_biomd0000000128_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.signaling_sbml_bertram2006_endothelin_biomd0000000128_model_state"
      ],
      "from": "signaling_sbml_bertram2006_endothelin_biomd0000000128_model.state"
    },
    {
      "to": [
        "visualisation.signaling_sbml_bertram2006_endothelin_biomd0000000128_model_summary"
      ],
      "from": "signaling_sbml_bertram2006_endothelin_biomd0000000128_model.summary"
    },
    {
      "to": [
        "visualisation.signaling_sbml_bertram2006_endothelin_biomd0000000128_model_species_labels"
      ],
      "from": "signaling_sbml_bertram2006_endothelin_biomd0000000128_model.species_labels"
    }
  ],
  "runtime": {
    "duration": 1,
    "initial_inputs": {},
    "communication_step": 0.1
  },
  "description": "Clean Biosimulant lab for systems signaling model: Bertram2006_Endothelin. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.",
  "schema_version": "2.0"
}

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