BiosimulantBiosimulant
Docs
Search labs...
Sign inGet Started

Faber2000 - Tong Ghouri Taggart Lab

About lab

Source-faithful physiology lab for Faber, Rudy, 2000 and Tong, Ghouri, Taggart, 2014. Public controls and outputs are mapped to real source symbols for electrophysiology.

Runtime

Duration0.01
Comms Step0.01
Settle Steps1

Runs

Total0
Completed0
Failed0

Metadata

Packagefaber2000-tong-ghouri-taggart-lab
Created2026-05-23
Updated2026-05-23
physiologycellmlphysiomefaithfulvisualisationother

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_membrane_voltage",
        "label": "Initial Membrane Voltage",
        "maps_to": "physiology_cellml_faber_rudy_2000_and_tong_ghouri_taggart_2014_25e_model.initial_membrane_voltage",
        "description": "Initial value for Membrane Voltage. Maps to source symbol `V`. Units: millivolt. Naming evidence: source symbol, component, or units provide a direct public name.",
        "accepted_units": [
          "millivolt"
        ]
      },
      {
        "name": "initial_sodium_h_gate",
        "label": "Initial Sodium H Gate",
        "maps_to": "physiology_cellml_faber_rudy_2000_and_tong_ghouri_taggart_2014_25e_model.initial_sodium_h_gate",
        "description": "Initial value for Sodium H Gate. Maps to source symbol `h`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name.",
        "accepted_units": [
          "dimensionless"
        ]
      }
    ],
    "outputs": [
      {
        "name": "state",
        "label": "Selected Source State",
        "maps_to": "physiology_cellml_faber_rudy_2000_and_tong_ghouri_taggart_2014_25e_model.state"
      },
      {
        "name": "summary",
        "label": "Simulation Summary",
        "maps_to": "physiology_cellml_faber_rudy_2000_and_tong_ghouri_taggart_2014_25e_model.summary"
      },
      {
        "name": "trajectory",
        "label": "Source Trajectory",
        "maps_to": "physiology_cellml_faber_rudy_2000_and_tong_ghouri_taggart_2014_25e_model.trajectory"
      },
      {
        "name": "variable_labels",
        "label": "Observable Labels",
        "maps_to": "physiology_cellml_faber_rudy_2000_and_tong_ghouri_taggart_2014_25e_model.variable_labels"
      },
      {
        "name": "sodium_current_i_ns_na",
        "label": "Sodium Current I Ns Na",
        "maps_to": "physiology_cellml_faber_rudy_2000_and_tong_ghouri_taggart_2014_25e_model.sodium_current_i_ns_na",
        "description": "Sodium Current I Ns Na. Maps to source symbol `I_ns_Na`. Units: microA_per_microF. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "potassium_current_i_ns_k",
        "label": "Potassium Current I Ns K",
        "maps_to": "physiology_cellml_faber_rudy_2000_and_tong_ghouri_taggart_2014_25e_model.potassium_current_i_ns_k",
        "description": "Potassium Current I Ns K. Maps to source symbol `I_ns_K`. Units: microA_per_microF. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "kd_kna",
        "label": "Kd Kna",
        "maps_to": "physiology_cellml_faber_rudy_2000_and_tong_ghouri_taggart_2014_25e_model.kd_kna",
        "description": "Kd Kna. Maps to source symbol `kdKNa`. Units: millimolar. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "pona",
        "label": "Pona",
        "maps_to": "physiology_cellml_faber_rudy_2000_and_tong_ghouri_taggart_2014_25e_model.pona",
        "description": "Pona. Maps to source symbol `pona`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "pov",
        "label": "Pov",
        "maps_to": "physiology_cellml_faber_rudy_2000_and_tong_ghouri_taggart_2014_25e_model.pov",
        "description": "Pov. Maps to source symbol `pov`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "sodium_conductance",
        "label": "Sodium Conductance",
        "maps_to": "physiology_cellml_faber_rudy_2000_and_tong_ghouri_taggart_2014_25e_model.sodium_conductance",
        "description": "Sodium Conductance. Maps to source symbol `g_K_Na`. Units: milliS_per_microF. Naming evidence: source symbol, component, or units provide a direct public name."
      }
    ]
  },
  "title": "Faber2000 - Tong Ghouri Taggart Lab",
  "models": [
    {
      "path": "owned/models/physiology_cellml_faber_rudy_2000_and_tong_ghouri_taggart_2014_25e_model",
      "alias": "physiology_cellml_faber_rudy_2000_and_tong_ghouri_taggart_2014_25e_model",
      "parameters": {
        "model_path": "data/faber_rudy_2000.cellml",
        "integration_step": 0.01
      },
      "provenance": {
        "owned_path": "owned/models/physiology_cellml_faber_rudy_2000_and_tong_ghouri_taggart_2014_25e_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.physiology_cellml_faber_rudy_2000_and_tong_ghouri_taggart_2014_25e_model_state"
      ],
      "from": "physiology_cellml_faber_rudy_2000_and_tong_ghouri_taggart_2014_25e_model.state"
    },
    {
      "to": [
        "visualisation.physiology_cellml_faber_rudy_2000_and_tong_ghouri_taggart_2014_25e_model_summary"
      ],
      "from": "physiology_cellml_faber_rudy_2000_and_tong_ghouri_taggart_2014_25e_model.summary"
    },
    {
      "to": [
        "visualisation.physiology_cellml_faber_rudy_2000_and_tong_ghouri_taggart_2014_25e_model_trajectory"
      ],
      "from": "physiology_cellml_faber_rudy_2000_and_tong_ghouri_taggart_2014_25e_model.trajectory"
    },
    {
      "to": [
        "visualisation.physiology_cellml_faber_rudy_2000_and_tong_ghouri_taggart_2014_25e_model_variable_labels"
      ],
      "from": "physiology_cellml_faber_rudy_2000_and_tong_ghouri_taggart_2014_25e_model.variable_labels"
    }
  ],
  "runtime": {
    "duration": 0.01,
    "settle_steps": 1,
    "initial_inputs": {},
    "communication_step": 0.01
  },
  "description": "Source-faithful physiology lab for Faber, Rudy, 2000 and Tong, Ghouri, Taggart, 2014. Public controls and outputs are mapped to real source symbols for electrophysiology.",
  "schema_version": "2.0"
}

Sign in to start your own run. Public-lab history stays visible here.

Select a run from History to view its results.