Ciliberto2003 - CyclinE / Cdk2 timer in the cell cycle of Xenopus laevis embryo Lab

{
  "io": {
    "inputs": [
      {
        "name": "wee1_total",
        "label": "Wee1 Total",
        "maps_to": "cellcycle_sbml_ciliberto2003_cycline_cdk2_timer_in_the_cell_cyc_biomd0000000697_model.wee1_total",
        "description": "Controls Wee1 Total in the lab model via `cellcycle_sbml_ciliberto2003_cycline_cdk2_timer_in_the_cell_cyc_biomd0000000697_model.wee1_total`."
      },
      {
        "name": "cyclin_total",
        "label": "Cyclin Total",
        "maps_to": "cellcycle_sbml_ciliberto2003_cycline_cdk2_timer_in_the_cell_cyc_biomd0000000697_model.cyclin_total",
        "description": "Controls Cyclin Total in the lab model via `cellcycle_sbml_ciliberto2003_cycline_cdk2_timer_in_the_cell_cyc_biomd0000000697_model.cyclin_total`."
      },
      {
        "name": "xic_total",
        "label": "Xic Total",
        "maps_to": "cellcycle_sbml_ciliberto2003_cycline_cdk2_timer_in_the_cell_cyc_biomd0000000697_model.xic_total",
        "description": "Controls Xic Total in the lab model via `cellcycle_sbml_ciliberto2003_cycline_cdk2_timer_in_the_cell_cyc_biomd0000000697_model.xic_total`."
      }
    ],
    "outputs": [
      {
        "name": "pcdk2_cyclin_e",
        "label": "PCdk2 Cyclin E",
        "maps_to": "cellcycle_sbml_ciliberto2003_cycline_cdk2_timer_in_the_cell_cyc_biomd0000000697_model.pcdk2_cyclin_e",
        "description": "Tracks PCdk2 Cyclin E in the lab model via `cellcycle_sbml_ciliberto2003_cycline_cdk2_timer_in_the_cell_cyc_biomd0000000697_model.pcdk2_cyclin_e`."
      },
      {
        "name": "cdk2_cyclin_e",
        "label": "CDK2 Cyclin E",
        "maps_to": "cellcycle_sbml_ciliberto2003_cycline_cdk2_timer_in_the_cell_cyc_biomd0000000697_model.cdk2_cyclin_e",
        "description": "Tracks CDK2 Cyclin E in the lab model via `cellcycle_sbml_ciliberto2003_cycline_cdk2_timer_in_the_cell_cyc_biomd0000000697_model.cdk2_cyclin_e`."
      },
      {
        "name": "wee1_a",
        "label": "Wee1 A",
        "maps_to": "cellcycle_sbml_ciliberto2003_cycline_cdk2_timer_in_the_cell_cyc_biomd0000000697_model.wee1_a",
        "description": "Tracks Wee1 A in the lab model via `cellcycle_sbml_ciliberto2003_cycline_cdk2_timer_in_the_cell_cyc_biomd0000000697_model.wee1_a`."
      },
      {
        "name": "cdk2_cyclin_erem",
        "label": "CDK2 Cyclin Erem",
        "maps_to": "cellcycle_sbml_ciliberto2003_cycline_cdk2_timer_in_the_cell_cyc_biomd0000000697_model.cdk2_cyclin_erem",
        "description": "Tracks CDK2 Cyclin Erem in the lab model via `cellcycle_sbml_ciliberto2003_cycline_cdk2_timer_in_the_cell_cyc_biomd0000000697_model.cdk2_cyclin_erem`."
      },
      {
        "name": "pcdk2_cyclin_erem",
        "label": "PCdk2 Cyclin Erem",
        "maps_to": "cellcycle_sbml_ciliberto2003_cycline_cdk2_timer_in_the_cell_cyc_biomd0000000697_model.pcdk2_cyclin_erem",
        "description": "Tracks PCdk2 Cyclin Erem in the lab model via `cellcycle_sbml_ciliberto2003_cycline_cdk2_timer_in_the_cell_cyc_biomd0000000697_model.pcdk2_cyclin_erem`."
      },
      {
        "name": "oxygen_dependent_degradation_factor_cyclin_e",
        "label": "Oxygen-dependent degradation factor Cyclin E",
        "maps_to": "cellcycle_sbml_ciliberto2003_cycline_cdk2_timer_in_the_cell_cyc_biomd0000000697_model.oxygen_dependent_degradation_factor_cyclin_e",
        "description": "Tracks Oxygen-dependent degradation factor Cyclin E in the lab model via `cellcycle_sbml_ciliberto2003_cycline_cdk2_timer_in_the_cell_cyc_biomd0000000697_model.oxygen_dependent_degradation_factor_cyclin_e`."
      },
      {
        "name": "xic_cdk_inhibitor",
        "label": "Xic CDK inhibitor",
        "maps_to": "cellcycle_sbml_ciliberto2003_cycline_cdk2_timer_in_the_cell_cyc_biomd0000000697_model.xic_cdk_inhibitor",
        "description": "Tracks Xic CDK inhibitor in the lab model via `cellcycle_sbml_ciliberto2003_cycline_cdk2_timer_in_the_cell_cyc_biomd0000000697_model.xic_cdk_inhibitor`."
      },
      {
        "name": "xic_cdk2_cyclin_e",
        "label": "Xic CDK2 Cyclin E",
        "maps_to": "cellcycle_sbml_ciliberto2003_cycline_cdk2_timer_in_the_cell_cyc_biomd0000000697_model.xic_cdk2_cyclin_e",
        "description": "Tracks Xic CDK2 Cyclin E in the lab model via `cellcycle_sbml_ciliberto2003_cycline_cdk2_timer_in_the_cell_cyc_biomd0000000697_model.xic_cdk2_cyclin_e`."
      },
      {
        "name": "xic_pcdk2_cyclin_e",
        "label": "Xic PCdk2 Cyclin E",
        "maps_to": "cellcycle_sbml_ciliberto2003_cycline_cdk2_timer_in_the_cell_cyc_biomd0000000697_model.xic_pcdk2_cyclin_e",
        "description": "Tracks Xic PCdk2 Cyclin E in the lab model via `cellcycle_sbml_ciliberto2003_cycline_cdk2_timer_in_the_cell_cyc_biomd0000000697_model.xic_pcdk2_cyclin_e`."
      },
      {
        "name": "xic_cdk2_cyclin_erem",
        "label": "Xic CDK2 Cyclin Erem",
        "maps_to": "cellcycle_sbml_ciliberto2003_cycline_cdk2_timer_in_the_cell_cyc_biomd0000000697_model.xic_cdk2_cyclin_erem",
        "description": "Tracks Xic CDK2 Cyclin Erem in the lab model via `cellcycle_sbml_ciliberto2003_cycline_cdk2_timer_in_the_cell_cyc_biomd0000000697_model.xic_cdk2_cyclin_erem`."
      },
      {
        "name": "xic_pcdk2_cyclin_erem",
        "label": "Xic PCdk2 Cyclin Erem",
        "maps_to": "cellcycle_sbml_ciliberto2003_cycline_cdk2_timer_in_the_cell_cyc_biomd0000000697_model.xic_pcdk2_cyclin_erem",
        "description": "Tracks Xic PCdk2 Cyclin Erem in the lab model via `cellcycle_sbml_ciliberto2003_cycline_cdk2_timer_in_the_cell_cyc_biomd0000000697_model.xic_pcdk2_cyclin_erem`."
      },
      {
        "name": "removed_xic_inhibitor_pool",
        "label": "Removed Xic inhibitor pool",
        "maps_to": "cellcycle_sbml_ciliberto2003_cycline_cdk2_timer_in_the_cell_cyc_biomd0000000697_model.removed_xic_inhibitor_pool",
        "description": "Tracks Removed Xic inhibitor pool in the lab model via `cellcycle_sbml_ciliberto2003_cycline_cdk2_timer_in_the_cell_cyc_biomd0000000697_model.removed_xic_inhibitor_pool`."
      },
      {
        "name": "kin_a",
        "label": "Kin A",
        "maps_to": "cellcycle_sbml_ciliberto2003_cycline_cdk2_timer_in_the_cell_cyc_biomd0000000697_model.kin_a",
        "description": "Tracks Kin A in the lab model via `cellcycle_sbml_ciliberto2003_cycline_cdk2_timer_in_the_cell_cyc_biomd0000000697_model.kin_a`."
      }
    ]
  },
  "title": "Ciliberto2003 - CyclinE / Cdk2 timer in the cell cycle of Xenopus laevis embryo Lab",
  "models": [
    {
      "path": "models/core",
      "alias": "cellcycle_sbml_ciliberto2003_cycline_cdk2_timer_in_the_cell_cyc_biomd0000000697_model"
    },
    {
      "path": "models/visualisation",
      "alias": "visualisation"
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.cellcycle_sbml_ciliberto2003_cycline_cdk2_timer_in_the_cell_cyc_biomd0000000697_model_state"
      ],
      "from": "cellcycle_sbml_ciliberto2003_cycline_cdk2_timer_in_the_cell_cyc_biomd0000000697_model.state"
    },
    {
      "to": [
        "visualisation.cellcycle_sbml_ciliberto2003_cycline_cdk2_timer_in_the_cell_cyc_biomd0000000697_model_summary"
      ],
      "from": "cellcycle_sbml_ciliberto2003_cycline_cdk2_timer_in_the_cell_cyc_biomd0000000697_model.summary"
    },
    {
      "to": [
        "visualisation.cellcycle_sbml_ciliberto2003_cycline_cdk2_timer_in_the_cell_cyc_biomd0000000697_model_species_labels"
      ],
      "from": "cellcycle_sbml_ciliberto2003_cycline_cdk2_timer_in_the_cell_cyc_biomd0000000697_model.species_labels"
    }
  ],
  "package": "ciliberto2003-cycline-cdk2-timer",
  "runtime": {
    "duration": 10,
    "initial_inputs": {},
    "communication_step": 1
  },
  "version": "1.0.0",
  "description": "Single-model lab wrapper for Ciliberto2003 - CyclinE / Cdk2 timer in the cell cycle of Xenopus laevis embryo. Ciliberto2003 - CyclinE / Cdk2 timer in thecell cycle of Xenopus laevis embryo This model is described in the article: A kinetic model of the cyclin E/Cdk2 developmental timer in Xenopus laevis embryo. It can be used to explore cell-cycle regulation dynamics and compare checkpoint behavior across conditions.",
  "schema_version": "2.0"
}