About lab
This a model from the article: Hypoxia-dependent sequestration of an oxygen sensor by a widespread structural motif can shape the hypoxic response - a predictive kinetic model Bernhard Schmierer, Béla. It can be used to explore systemsbiology schmierer2010 fih ankyrins BioModels0000000300 dynamics and compare simulation behavior across conditions.
Runtime
Duration1
Comms Step0.1
Runs
Total0
Completed0
Failed0
Metadata
Packageschmierer2010-fih-ankyrins-lab
Created2026-05-17
Updated2026-05-17
systemsbiologysbmlbiomodels_ebifaithfulcuratedvisualisation
Manifest
{
"io": {
"inputs": [
{
"name": "initial_atot",
"label": "Initial Atot",
"maps_to": "systemsbiology_sbml_schmierer2010_fih_ankyrins_biomd0000000300_model.initial_atot",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `species_5`."
},
{
"name": "initial_model_state_a",
"label": "Initial Model State A",
"maps_to": "systemsbiology_sbml_schmierer2010_fih_ankyrins_biomd0000000300_model.initial_model_state_a",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `species_3`."
},
{
"name": "initial_ftot",
"label": "Initial Ftot",
"maps_to": "systemsbiology_sbml_schmierer2010_fih_ankyrins_biomd0000000300_model.initial_ftot",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `species_7`."
},
{
"name": "initial_a_for_plotting",
"label": "Initial A For Plotting",
"maps_to": "systemsbiology_sbml_schmierer2010_fih_ankyrins_biomd0000000300_model.initial_a_for_plotting",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `species_16`."
},
{
"name": "initial_ptot",
"label": "Initial Ptot",
"maps_to": "systemsbiology_sbml_schmierer2010_fih_ankyrins_biomd0000000300_model.initial_ptot",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `species_8`."
},
{
"name": "initial_fi_hfree",
"label": "Initial Fi Hfree",
"maps_to": "systemsbiology_sbml_schmierer2010_fih_ankyrins_biomd0000000300_model.initial_fi_hfree",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `species_12`."
}
],
"outputs": [
{
"name": "state",
"maps_to": "systemsbiology_sbml_schmierer2010_fih_ankyrins_biomd0000000300_model.state"
},
{
"name": "summary",
"maps_to": "systemsbiology_sbml_schmierer2010_fih_ankyrins_biomd0000000300_model.summary"
},
{
"name": "species_labels",
"maps_to": "systemsbiology_sbml_schmierer2010_fih_ankyrins_biomd0000000300_model.species_labels"
},
{
"name": "atot",
"maps_to": "systemsbiology_sbml_schmierer2010_fih_ankyrins_biomd0000000300_model.atot"
},
{
"name": "model_state_a",
"maps_to": "systemsbiology_sbml_schmierer2010_fih_ankyrins_biomd0000000300_model.model_state_a"
},
{
"name": "ftot",
"maps_to": "systemsbiology_sbml_schmierer2010_fih_ankyrins_biomd0000000300_model.ftot"
},
{
"name": "a_for_plotting",
"maps_to": "systemsbiology_sbml_schmierer2010_fih_ankyrins_biomd0000000300_model.a_for_plotting"
},
{
"name": "ptot",
"maps_to": "systemsbiology_sbml_schmierer2010_fih_ankyrins_biomd0000000300_model.ptot"
},
{
"name": "fi_hfree",
"maps_to": "systemsbiology_sbml_schmierer2010_fih_ankyrins_biomd0000000300_model.fi_hfree"
}
]
},
"tags": [
"systemsbiology",
"sbml",
"biomodels_ebi",
"faithful",
"curated"
],
"title": "Schmierer2010 Fih Ankyrins Lab",
"models": [
{
"path": "owned/models/systemsbiology_sbml_schmierer2010_fih_ankyrins_biomd0000000300_model",
"alias": "systemsbiology_sbml_schmierer2010_fih_ankyrins_biomd0000000300_model",
"provenance": {
"owned_path": "owned/models/systemsbiology_sbml_schmierer2010_fih_ankyrins_biomd0000000300_model"
}
},
{
"path": "owned/models/visualisation",
"alias": "visualisation",
"provenance": {
"owned_path": "owned/models/visualisation"
}
}
],
"wiring": [
{
"to": [
"visualisation.systemsbiology_sbml_schmierer2010_fih_ankyrins_biomd0000000300_model_state"
],
"from": "systemsbiology_sbml_schmierer2010_fih_ankyrins_biomd0000000300_model.state"
},
{
"to": [
"visualisation.systemsbiology_sbml_schmierer2010_fih_ankyrins_biomd0000000300_model_summary"
],
"from": "systemsbiology_sbml_schmierer2010_fih_ankyrins_biomd0000000300_model.summary"
},
{
"to": [
"visualisation.systemsbiology_sbml_schmierer2010_fih_ankyrins_biomd0000000300_model_species_labels"
],
"from": "systemsbiology_sbml_schmierer2010_fih_ankyrins_biomd0000000300_model.species_labels"
}
],
"runtime": {
"duration": 1,
"initial_inputs": {},
"communication_step": 0.1
},
"description": "This a model from the article: Hypoxia-dependent sequestration of an oxygen sensor by a widespread structural motif can shape the hypoxic response - a predictive kinetic model Bernhard Schmierer, Béla. It can be used to explore systemsbiology schmierer2010 fih ankyrins BioModels0000000300 dynamics and compare simulation behavior across conditions.",
"schema_version": "2.0"
}Sign in to start your own run. Public-lab history stays visible here.
Select a run from History to view its results.