About lab
Source-faithful physiology lab for Fox, Mcharg, Gilmour, 2002. Public controls and outputs are mapped to real source symbols for electrophysiology.
Runtime
Duration0.01
Comms Step0.01
Settle Steps1
Runs
Total0
Completed0
Failed0
Metadata
Packagefox2002-ionic-mechanism-electrical-alternans-lab
Created2026-05-23
Updated2026-05-23
physiologycellmlphysiomefaithfulvisualisationother
Manifest
{
"io": {
"inputs": [
{
"name": "initial_membrane_voltage",
"label": "Initial Membrane Voltage",
"maps_to": "physiology_cellml_fox_mcharg_gilmour_2002_foxmcharggilmour2002_model.initial_membrane_voltage",
"description": "Initial value for Membrane Voltage. Maps to source symbol `V`. Units: millivolt. Naming evidence: source symbol, component, or units provide a direct public name.",
"accepted_units": [
"millivolt"
]
},
{
"name": "initial_calcium_d_gate",
"label": "Initial Calcium D Gate",
"maps_to": "physiology_cellml_fox_mcharg_gilmour_2002_foxmcharggilmour2002_model.initial_calcium_d_gate",
"description": "Initial value for Calcium D Gate. Maps to source symbol `d`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name.",
"accepted_units": [
"dimensionless"
]
}
],
"outputs": [
{
"name": "state",
"label": "Selected Source State",
"maps_to": "physiology_cellml_fox_mcharg_gilmour_2002_foxmcharggilmour2002_model.state"
},
{
"name": "summary",
"label": "Simulation Summary",
"maps_to": "physiology_cellml_fox_mcharg_gilmour_2002_foxmcharggilmour2002_model.summary"
},
{
"name": "trajectory",
"label": "Source Trajectory",
"maps_to": "physiology_cellml_fox_mcharg_gilmour_2002_foxmcharggilmour2002_model.trajectory"
},
{
"name": "variable_labels",
"label": "Observable Labels",
"maps_to": "physiology_cellml_fox_mcharg_gilmour_2002_foxmcharggilmour2002_model.variable_labels"
},
{
"name": "sodium_current_i_na_k",
"label": "Sodium Current I Na K",
"maps_to": "physiology_cellml_fox_mcharg_gilmour_2002_foxmcharggilmour2002_model.sodium_current_i_na_k",
"description": "Sodium Current I Na K. Maps to source symbol `i_NaK`. Units: microA_per_microF. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "sodium_current_i_na_k_max",
"label": "Sodium Current I Na K Max",
"maps_to": "physiology_cellml_fox_mcharg_gilmour_2002_foxmcharggilmour2002_model.sodium_current_i_na_k_max",
"description": "Sodium Current I Na K Max. Maps to source symbol `i_NaK_max`. Units: microA_per_microF. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "membrane_voltage",
"label": "Membrane Voltage",
"maps_to": "physiology_cellml_fox_mcharg_gilmour_2002_foxmcharggilmour2002_model.membrane_voltage",
"description": "Membrane Voltage. Maps to source symbol `V`. Units: millivolt. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "calcium_d_gate",
"label": "Calcium D Gate",
"maps_to": "physiology_cellml_fox_mcharg_gilmour_2002_foxmcharggilmour2002_model.calcium_d_gate",
"description": "Calcium D Gate. Maps to source symbol `d`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "calcium_f_gate",
"label": "Calcium F Gate",
"maps_to": "physiology_cellml_fox_mcharg_gilmour_2002_foxmcharggilmour2002_model.calcium_f_gate",
"description": "Calcium F Gate. Maps to source symbol `f`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "sodium_h_gate",
"label": "Sodium H Gate",
"maps_to": "physiology_cellml_fox_mcharg_gilmour_2002_foxmcharggilmour2002_model.sodium_h_gate",
"description": "Sodium H Gate. Maps to source symbol `h`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
}
]
},
"title": "Fox2002 - Ionic Mechanism Electrical Alternans Lab",
"models": [
{
"path": "owned/models/physiology_cellml_fox_mcharg_gilmour_2002_foxmcharggilmour2002_model",
"alias": "physiology_cellml_fox_mcharg_gilmour_2002_foxmcharggilmour2002_model",
"parameters": {
"model_path": "data/fox_mcharg_gilmour_2002.cellml",
"integration_step": 0.01
},
"provenance": {
"owned_path": "owned/models/physiology_cellml_fox_mcharg_gilmour_2002_foxmcharggilmour2002_model"
}
},
{
"path": "owned/models/visualisation",
"alias": "visualisation",
"provenance": {
"owned_path": "owned/models/visualisation"
}
}
],
"wiring": [
{
"to": [
"visualisation.physiology_cellml_fox_mcharg_gilmour_2002_foxmcharggilmour2002_model_state"
],
"from": "physiology_cellml_fox_mcharg_gilmour_2002_foxmcharggilmour2002_model.state"
},
{
"to": [
"visualisation.physiology_cellml_fox_mcharg_gilmour_2002_foxmcharggilmour2002_model_summary"
],
"from": "physiology_cellml_fox_mcharg_gilmour_2002_foxmcharggilmour2002_model.summary"
},
{
"to": [
"visualisation.physiology_cellml_fox_mcharg_gilmour_2002_foxmcharggilmour2002_model_trajectory"
],
"from": "physiology_cellml_fox_mcharg_gilmour_2002_foxmcharggilmour2002_model.trajectory"
},
{
"to": [
"visualisation.physiology_cellml_fox_mcharg_gilmour_2002_foxmcharggilmour2002_model_variable_labels"
],
"from": "physiology_cellml_fox_mcharg_gilmour_2002_foxmcharggilmour2002_model.variable_labels"
}
],
"runtime": {
"duration": 0.01,
"settle_steps": 1,
"initial_inputs": {},
"communication_step": 0.01
},
"description": "Source-faithful physiology lab for Fox, Mcharg, Gilmour, 2002. Public controls and outputs are mapped to real source symbols for electrophysiology.",
"schema_version": "2.0"
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