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Gupta2019 Restoration Of Cytosolic Calcium Inhibits Mycobacterium Tu Lab

About lab

This is a four dimensionsal ordinary differential equation mathematical model that explores the contribution of PI3P during Mycobacterium tuberculosis (Mtb) phagocytosis. It can be used to explore systemsbiology gupta2019 restoration of cytosolic calcium dynamics and compare simulation behavior across conditions.

Runtime

Duration1
Comms Step0.1

Runs

Total0
Completed0
Failed0

Metadata

Packagegupta2019-restoration-of-cytosolic-calcium-inhibits-mycobacteriu
Created2026-05-17
Updated2026-05-17
physiologysystemsbiologysbmlbiomodels_ebifaithfulcuratedvisualisation

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_model_state_ci",
        "label": "Initial Model State Ci",
        "maps_to": "systemsbiology_sbml_gupta2019_restoration_of_cytosolic_calcium_inhib_model1911120004_model.initial_model_state_ci",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `Ci`."
      },
      {
        "name": "initial_model_state_ce",
        "label": "Initial Model State Ce",
        "maps_to": "systemsbiology_sbml_gupta2019_restoration_of_cytosolic_calcium_inhib_model1911120004_model.initial_model_state_ce",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `Ce`."
      },
      {
        "name": "initial_model_state_k",
        "label": "Initial Model State K",
        "maps_to": "systemsbiology_sbml_gupta2019_restoration_of_cytosolic_calcium_inhib_model1911120004_model.initial_model_state_k",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `K`."
      },
      {
        "name": "initial_model_state_p",
        "label": "Initial Model State P",
        "maps_to": "systemsbiology_sbml_gupta2019_restoration_of_cytosolic_calcium_inhib_model1911120004_model.initial_model_state_p",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `P`."
      }
    ],
    "outputs": [
      {
        "name": "state",
        "maps_to": "systemsbiology_sbml_gupta2019_restoration_of_cytosolic_calcium_inhib_model1911120004_model.state"
      },
      {
        "name": "summary",
        "maps_to": "systemsbiology_sbml_gupta2019_restoration_of_cytosolic_calcium_inhib_model1911120004_model.summary"
      },
      {
        "name": "species_labels",
        "maps_to": "systemsbiology_sbml_gupta2019_restoration_of_cytosolic_calcium_inhib_model1911120004_model.species_labels"
      },
      {
        "name": "model_state_ci",
        "maps_to": "systemsbiology_sbml_gupta2019_restoration_of_cytosolic_calcium_inhib_model1911120004_model.model_state_ci"
      },
      {
        "name": "model_state_ce",
        "maps_to": "systemsbiology_sbml_gupta2019_restoration_of_cytosolic_calcium_inhib_model1911120004_model.model_state_ce"
      },
      {
        "name": "model_state_k",
        "maps_to": "systemsbiology_sbml_gupta2019_restoration_of_cytosolic_calcium_inhib_model1911120004_model.model_state_k"
      },
      {
        "name": "model_state_p",
        "maps_to": "systemsbiology_sbml_gupta2019_restoration_of_cytosolic_calcium_inhib_model1911120004_model.model_state_p"
      }
    ]
  },
  "tags": [
    "physiology",
    "systemsbiology",
    "sbml",
    "biomodels_ebi",
    "faithful",
    "curated"
  ],
  "title": "Gupta2019 Restoration Of Cytosolic Calcium Inhibits Mycobacterium Tu Lab",
  "models": [
    {
      "path": "owned/models/systemsbiology_sbml_gupta2019_restoration_of_cytosolic_calcium_inhib_model1911120004_model",
      "alias": "systemsbiology_sbml_gupta2019_restoration_of_cytosolic_calcium_inhib_model1911120004_model",
      "provenance": {
        "owned_path": "owned/models/systemsbiology_sbml_gupta2019_restoration_of_cytosolic_calcium_inhib_model1911120004_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.systemsbiology_sbml_gupta2019_restoration_of_cytosolic_calcium_inhib_model1911120004_model_state"
      ],
      "from": "systemsbiology_sbml_gupta2019_restoration_of_cytosolic_calcium_inhib_model1911120004_model.state"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_gupta2019_restoration_of_cytosolic_calcium_inhib_model1911120004_model_summary"
      ],
      "from": "systemsbiology_sbml_gupta2019_restoration_of_cytosolic_calcium_inhib_model1911120004_model.summary"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_gupta2019_restoration_of_cytosolic_calcium_inhib_model1911120004_model_species_labels"
      ],
      "from": "systemsbiology_sbml_gupta2019_restoration_of_cytosolic_calcium_inhib_model1911120004_model.species_labels"
    }
  ],
  "runtime": {
    "duration": 1,
    "initial_inputs": {},
    "communication_step": 0.1
  },
  "description": "This is a four dimensionsal ordinary differential equation mathematical model that explores the contribution of PI3P during Mycobacterium tuberculosis (Mtb) phagocytosis. It can be used to explore systemsbiology gupta2019 restoration of cytosolic calcium dynamics and compare simulation behavior across conditions.",
  "schema_version": "2.0"
}

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