BiosimulantBiosimulant
Docs
Search labs...
Sign inGet Started

Bungay2006 Plasma Lab

About lab

This model is from the article: Modelling thrombin generation in human ovarian follicular fluid Bungay Sharene D., Gentry Patricia A., Gentry Rodney D. It can be used to explore systemsbiology bungay2006 plasma BioModels0000000332 dynamics and compare simulation behavior across conditions.

Runtime

Duration1
Comms Step0.1

Runs

Total0
Completed0
Failed0

Metadata

Packagebungay2006-plasma-lab
Created2026-05-17
Updated2026-05-17
generegulationsystemsbiologysbmlbiomodels_ebifaithfulcuratedvisualisation

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_at_f",
        "label": "Initial At F",
        "maps_to": "systemsbiology_sbml_bungay2006_plasma_biomd0000000332_model.initial_at_f",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `AT_f`."
      },
      {
        "name": "initial_alpha2_m_l",
        "label": "Initial Alpha2 M L",
        "maps_to": "systemsbiology_sbml_bungay2006_plasma_biomd0000000332_model.initial_alpha2_m_l",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `alpha2M_l`."
      },
      {
        "name": "initial_ii_f",
        "label": "Initial Ii F",
        "maps_to": "systemsbiology_sbml_bungay2006_plasma_biomd0000000332_model.initial_ii_f",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `II_f`."
      },
      {
        "name": "initial_ps_f",
        "label": "Initial Ps F",
        "maps_to": "systemsbiology_sbml_bungay2006_plasma_biomd0000000332_model.initial_ps_f",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `PS_f`."
      },
      {
        "name": "initial_model_state_x_f",
        "label": "Initial Model State X F",
        "maps_to": "systemsbiology_sbml_bungay2006_plasma_biomd0000000332_model.initial_model_state_x_f",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `X_f`."
      },
      {
        "name": "initial_ix_f",
        "label": "Initial Ix F",
        "maps_to": "systemsbiology_sbml_bungay2006_plasma_biomd0000000332_model.initial_ix_f",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `IX_f`."
      }
    ],
    "outputs": [
      {
        "name": "state",
        "maps_to": "systemsbiology_sbml_bungay2006_plasma_biomd0000000332_model.state"
      },
      {
        "name": "summary",
        "maps_to": "systemsbiology_sbml_bungay2006_plasma_biomd0000000332_model.summary"
      },
      {
        "name": "species_labels",
        "maps_to": "systemsbiology_sbml_bungay2006_plasma_biomd0000000332_model.species_labels"
      },
      {
        "name": "at_f",
        "maps_to": "systemsbiology_sbml_bungay2006_plasma_biomd0000000332_model.at_f"
      },
      {
        "name": "alpha2_m_l",
        "maps_to": "systemsbiology_sbml_bungay2006_plasma_biomd0000000332_model.alpha2_m_l"
      },
      {
        "name": "ii_f",
        "maps_to": "systemsbiology_sbml_bungay2006_plasma_biomd0000000332_model.ii_f"
      },
      {
        "name": "ps_f",
        "maps_to": "systemsbiology_sbml_bungay2006_plasma_biomd0000000332_model.ps_f"
      },
      {
        "name": "x_f",
        "maps_to": "systemsbiology_sbml_bungay2006_plasma_biomd0000000332_model.x_f"
      },
      {
        "name": "ix_f",
        "maps_to": "systemsbiology_sbml_bungay2006_plasma_biomd0000000332_model.ix_f"
      }
    ]
  },
  "tags": [
    "generegulation",
    "systemsbiology",
    "sbml",
    "biomodels_ebi",
    "faithful",
    "curated"
  ],
  "title": "Bungay2006 Plasma Lab",
  "models": [
    {
      "path": "owned/models/systemsbiology_sbml_bungay2006_plasma_biomd0000000332_model",
      "alias": "systemsbiology_sbml_bungay2006_plasma_biomd0000000332_model",
      "provenance": {
        "owned_path": "owned/models/systemsbiology_sbml_bungay2006_plasma_biomd0000000332_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.systemsbiology_sbml_bungay2006_plasma_biomd0000000332_model_state"
      ],
      "from": "systemsbiology_sbml_bungay2006_plasma_biomd0000000332_model.state"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_bungay2006_plasma_biomd0000000332_model_summary"
      ],
      "from": "systemsbiology_sbml_bungay2006_plasma_biomd0000000332_model.summary"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_bungay2006_plasma_biomd0000000332_model_species_labels"
      ],
      "from": "systemsbiology_sbml_bungay2006_plasma_biomd0000000332_model.species_labels"
    }
  ],
  "runtime": {
    "duration": 1,
    "initial_inputs": {},
    "communication_step": 0.1
  },
  "description": "This model is from the article: Modelling thrombin generation in human ovarian follicular fluid Bungay Sharene D., Gentry Patricia A., Gentry Rodney D. It can be used to explore systemsbiology bungay2006 plasma BioModels0000000332 dynamics and compare simulation behavior across conditions.",
  "schema_version": "2.0"
}

Sign in to start your own run. Public-lab history stays visible here.

Select a run from History to view its results.