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Clancy2001 - Cellular Consequences Herg Mutations Long Qt Syndrome Lab

About lab

Source-faithful physiology lab for Clancy, Rudy, 2001. Public controls and outputs are mapped to real source symbols for electrophysiology.

Runtime

Duration0.01
Comms Step0.01
Settle Steps1

Runs

Total0
Completed0
Failed0

Metadata

Packageclancy2001-cellular-consequences-herg-mutations-long-qt-syndrome
Created2026-05-23
Updated2026-05-23
physiologycellmlphysiomefaithfulvisualisationother

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_membrane_voltage",
        "label": "Initial Membrane Voltage",
        "maps_to": "physiology_cellml_clancy_rudy_2001_clancyrudy2001_model.initial_membrane_voltage",
        "description": "Initial value for Membrane Voltage. Maps to source symbol `V`. Units: millivolt. Naming evidence: source symbol, component, or units provide a direct public name.",
        "accepted_units": [
          "millivolt"
        ]
      },
      {
        "name": "initial_xs1",
        "label": "Initial Xs1",
        "maps_to": "physiology_cellml_clancy_rudy_2001_clancyrudy2001_model.initial_xs1",
        "description": "Initial value for Xs1. Maps to source symbol `xs1`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name.",
        "accepted_units": [
          "dimensionless"
        ]
      }
    ],
    "outputs": [
      {
        "name": "state",
        "label": "Selected Source State",
        "maps_to": "physiology_cellml_clancy_rudy_2001_clancyrudy2001_model.state"
      },
      {
        "name": "summary",
        "label": "Simulation Summary",
        "maps_to": "physiology_cellml_clancy_rudy_2001_clancyrudy2001_model.summary"
      },
      {
        "name": "trajectory",
        "label": "Source Trajectory",
        "maps_to": "physiology_cellml_clancy_rudy_2001_clancyrudy2001_model.trajectory"
      },
      {
        "name": "variable_labels",
        "label": "Observable Labels",
        "maps_to": "physiology_cellml_clancy_rudy_2001_clancyrudy2001_model.variable_labels"
      },
      {
        "name": "sodium_current_i_ns_na",
        "label": "Sodium Current I Ns Na",
        "maps_to": "physiology_cellml_clancy_rudy_2001_clancyrudy2001_model.sodium_current_i_ns_na",
        "description": "Sodium Current I Ns Na. Maps to source symbol `I_ns_Na`. Units: microA_per_microF. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "potassium_current_i_ns_k",
        "label": "Potassium Current I Ns K",
        "maps_to": "physiology_cellml_clancy_rudy_2001_clancyrudy2001_model.potassium_current_i_ns_k",
        "description": "Potassium Current I Ns K. Maps to source symbol `I_ns_K`. Units: microA_per_microF. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "kd_kna",
        "label": "Kd Kna",
        "maps_to": "physiology_cellml_clancy_rudy_2001_clancyrudy2001_model.kd_kna",
        "description": "Kd Kna. Maps to source symbol `kdKNa`. Units: millimolar. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "pona",
        "label": "Pona",
        "maps_to": "physiology_cellml_clancy_rudy_2001_clancyrudy2001_model.pona",
        "description": "Pona. Maps to source symbol `pona`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "pov",
        "label": "Pov",
        "maps_to": "physiology_cellml_clancy_rudy_2001_clancyrudy2001_model.pov",
        "description": "Pov. Maps to source symbol `pov`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "sodium_conductance",
        "label": "Sodium Conductance",
        "maps_to": "physiology_cellml_clancy_rudy_2001_clancyrudy2001_model.sodium_conductance",
        "description": "Sodium Conductance. Maps to source symbol `g_K_Na`. Units: milliS_per_microF. Naming evidence: source symbol, component, or units provide a direct public name."
      }
    ]
  },
  "title": "Clancy2001 - Cellular Consequences Herg Mutations Long Qt Syndrome Lab",
  "models": [
    {
      "path": "owned/models/physiology_cellml_clancy_rudy_2001_clancyrudy2001_model",
      "alias": "physiology_cellml_clancy_rudy_2001_clancyrudy2001_model",
      "parameters": {
        "model_path": "data/clancy_rudy_2001.cellml",
        "integration_step": 0.01
      },
      "provenance": {
        "owned_path": "owned/models/physiology_cellml_clancy_rudy_2001_clancyrudy2001_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.physiology_cellml_clancy_rudy_2001_clancyrudy2001_model_state"
      ],
      "from": "physiology_cellml_clancy_rudy_2001_clancyrudy2001_model.state"
    },
    {
      "to": [
        "visualisation.physiology_cellml_clancy_rudy_2001_clancyrudy2001_model_summary"
      ],
      "from": "physiology_cellml_clancy_rudy_2001_clancyrudy2001_model.summary"
    },
    {
      "to": [
        "visualisation.physiology_cellml_clancy_rudy_2001_clancyrudy2001_model_trajectory"
      ],
      "from": "physiology_cellml_clancy_rudy_2001_clancyrudy2001_model.trajectory"
    },
    {
      "to": [
        "visualisation.physiology_cellml_clancy_rudy_2001_clancyrudy2001_model_variable_labels"
      ],
      "from": "physiology_cellml_clancy_rudy_2001_clancyrudy2001_model.variable_labels"
    }
  ],
  "runtime": {
    "duration": 0.01,
    "settle_steps": 1,
    "initial_inputs": {},
    "communication_step": 0.01
  },
  "description": "Source-faithful physiology lab for Clancy, Rudy, 2001. Public controls and outputs are mapped to real source symbols for electrophysiology.",
  "schema_version": "2.0"
}

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