Ueda2001 - Robust Oscillations Within Interlocked Feedback Drosophila Lab

{
  "io": {
    "inputs": [
      {
        "name": "initial_clk_m_rna",
        "label": "Initial Clk M RNA",
        "maps_to": "physiology_cellml_ueda_hagiwara_kitano_2001_uedahagiwarakitano2001_model.initial_clk_m_rna",
        "description": "Initial value for Clk M RNA. Maps to source symbol `Clk_m`. Units: nanomolar. Naming evidence: source metadata names `Clk_m` as `Clk mRNA`.",
        "accepted_units": [
          "nanomolar"
        ]
      },
      {
        "name": "initial_cytosolic_clk_protein",
        "label": "Initial Cytosolic Clk Protein",
        "maps_to": "physiology_cellml_ueda_hagiwara_kitano_2001_uedahagiwarakitano2001_model.initial_cytosolic_clk_protein",
        "description": "Initial value for Cytosolic Clk Protein. Maps to source symbol `Clk_c`. Units: nanomolar. Naming evidence: source metadata names `Clk_c` as `cytosolic Clk protein`.",
        "accepted_units": [
          "nanomolar"
        ]
      }
    ],
    "outputs": [
      {
        "name": "state",
        "label": "Selected Source State",
        "maps_to": "physiology_cellml_ueda_hagiwara_kitano_2001_uedahagiwarakitano2001_model.state"
      },
      {
        "name": "summary",
        "label": "Simulation Summary",
        "maps_to": "physiology_cellml_ueda_hagiwara_kitano_2001_uedahagiwarakitano2001_model.summary"
      },
      {
        "name": "trajectory",
        "label": "Source Trajectory",
        "maps_to": "physiology_cellml_ueda_hagiwara_kitano_2001_uedahagiwarakitano2001_model.trajectory"
      },
      {
        "name": "variable_labels",
        "label": "Observable Labels",
        "maps_to": "physiology_cellml_ueda_hagiwara_kitano_2001_uedahagiwarakitano2001_model.variable_labels"
      },
      {
        "name": "clk_m_rna",
        "label": "Clk M RNA",
        "maps_to": "physiology_cellml_ueda_hagiwara_kitano_2001_uedahagiwarakitano2001_model.clk_m_rna",
        "description": "Clk M RNA. Maps to source symbol `Clk_m`. Units: nanomolar. Naming evidence: source metadata names `Clk_m` as `Clk mRNA`."
      },
      {
        "name": "cytosolic_clk_protein",
        "label": "Cytosolic Clk Protein",
        "maps_to": "physiology_cellml_ueda_hagiwara_kitano_2001_uedahagiwarakitano2001_model.cytosolic_clk_protein",
        "description": "Cytosolic Clk Protein. Maps to source symbol `Clk_c`. Units: nanomolar. Naming evidence: source metadata names `Clk_c` as `cytosolic Clk protein`."
      },
      {
        "name": "cytosolic_per_protein",
        "label": "Cytosolic Per Protein",
        "maps_to": "physiology_cellml_ueda_hagiwara_kitano_2001_uedahagiwarakitano2001_model.cytosolic_per_protein",
        "description": "Cytosolic Per Protein. Maps to source symbol `Per_c`. Units: nanomolar. Naming evidence: source metadata names `Per_c` as `cytosolic Per protein`."
      },
      {
        "name": "per_m_rna",
        "label": "Per M RNA",
        "maps_to": "physiology_cellml_ueda_hagiwara_kitano_2001_uedahagiwarakitano2001_model.per_m_rna",
        "description": "Per M RNA. Maps to source symbol `Per_m`. Units: nanomolar. Naming evidence: source metadata names `Per_m` as `Per mRNA`."
      },
      {
        "name": "cytosolic_clk_cyc_protein_complex",
        "label": "Cytosolic Clk Cyc Protein Complex",
        "maps_to": "physiology_cellml_ueda_hagiwara_kitano_2001_uedahagiwarakitano2001_model.cytosolic_clk_cyc_protein_complex",
        "description": "Cytosolic Clk Cyc Protein Complex. Maps to source symbol `CC_c`. Units: nanomolar. Naming evidence: source metadata names `CC_c` as `cytosolic Clk-Cyc protein complex`."
      },
      {
        "name": "nuclear_clk_cyc_protein_complex",
        "label": "Nuclear Clk Cyc Protein Complex",
        "maps_to": "physiology_cellml_ueda_hagiwara_kitano_2001_uedahagiwarakitano2001_model.nuclear_clk_cyc_protein_complex",
        "description": "Nuclear Clk Cyc Protein Complex. Maps to source symbol `CC_n`. Units: nanomolar. Naming evidence: source metadata names `CC_n` as `nuclear Clk-Cyc protein complex`."
      }
    ]
  },
  "title": "Ueda2001 - Robust Oscillations Within Interlocked Feedback Drosophila Lab",
  "models": [
    {
      "path": "models/core",
      "alias": "physiology_cellml_ueda_hagiwara_kitano_2001_uedahagiwarakitano2001_model",
      "parameters": {
        "model_path": "data/ueda_hagiwara_kitano_2001.cellml",
        "integration_step": 0.01
      }
    },
    {
      "path": "models/visualisation",
      "alias": "visualisation"
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.physiology_cellml_ueda_hagiwara_kitano_2001_uedahagiwarakitano2001_model_state"
      ],
      "from": "physiology_cellml_ueda_hagiwara_kitano_2001_uedahagiwarakitano2001_model.state"
    },
    {
      "to": [
        "visualisation.physiology_cellml_ueda_hagiwara_kitano_2001_uedahagiwarakitano2001_model_summary"
      ],
      "from": "physiology_cellml_ueda_hagiwara_kitano_2001_uedahagiwarakitano2001_model.summary"
    },
    {
      "to": [
        "visualisation.physiology_cellml_ueda_hagiwara_kitano_2001_uedahagiwarakitano2001_model_trajectory"
      ],
      "from": "physiology_cellml_ueda_hagiwara_kitano_2001_uedahagiwarakitano2001_model.trajectory"
    },
    {
      "to": [
        "visualisation.physiology_cellml_ueda_hagiwara_kitano_2001_uedahagiwarakitano2001_model_variable_labels"
      ],
      "from": "physiology_cellml_ueda_hagiwara_kitano_2001_uedahagiwarakitano2001_model.variable_labels"
    }
  ],
  "package": "ueda2001-robust-oscillations-within-interlocked-feedbac-9ea688a8",
  "runtime": {
    "duration": 0.01,
    "settle_steps": 1,
    "initial_inputs": {},
    "communication_step": 0.01
  },
  "version": "1.0.0",
  "description": "Source-faithful physiology lab for Ueda, Hagiwara, Kitano, 2001. Public controls and outputs are mapped to real source symbols for oscillatory physiology.",
  "schema_version": "2.0"
}