Curien2009_Aspartate_Metabolism Lab

{
  "io": {
    "inputs": [
      {
        "name": "initial_metabolic_pathway_state_1",
        "units": "native SBML value",
        "default": 0,
        "maps_to": "metabolism_sbml_curien2009_aspartate_metabolism_biomd0000000212_model.initial_metabolic_pathway_state_1",
        "description": "Initial condition for metabolic pathway state 1. Maps to bundled SBML symbol `Lys`. Applied before the Tellurium simulation starts; this does not change kinetic parameters or equations. Default from bundled SBML initial value."
      },
      {
        "name": "initial_aspartyl_p",
        "units": "native SBML value",
        "default": 0,
        "maps_to": "metabolism_sbml_curien2009_aspartate_metabolism_biomd0000000212_model.initial_aspartyl_p",
        "description": "Initial condition for aspartyl p. Maps to bundled SBML symbol `AspP`. Applied before the Tellurium simulation starts; this does not change kinetic parameters or equations. Default from bundled SBML initial value."
      },
      {
        "name": "initial_threonine",
        "units": "native SBML value",
        "default": 0,
        "maps_to": "metabolism_sbml_curien2009_aspartate_metabolism_biomd0000000212_model.initial_threonine",
        "description": "Initial condition for threonine. Maps to bundled SBML symbol `Thr`. Applied before the Tellurium simulation starts; this does not change kinetic parameters or equations. Default from bundled SBML initial value."
      },
      {
        "name": "initial_aspartate_semialdehyde",
        "units": "native SBML value",
        "default": 0,
        "maps_to": "metabolism_sbml_curien2009_aspartate_metabolism_biomd0000000212_model.initial_aspartate_semialdehyde",
        "description": "Initial condition for aspartate semialdehyde. Maps to bundled SBML symbol `ASA`. Applied before the Tellurium simulation starts; this does not change kinetic parameters or equations. Default from bundled SBML initial value."
      },
      {
        "name": "initial_homoserine",
        "units": "native SBML value",
        "default": 0,
        "maps_to": "metabolism_sbml_curien2009_aspartate_metabolism_biomd0000000212_model.initial_homoserine",
        "description": "Initial condition for homoserine. Maps to bundled SBML symbol `Hser`. Applied before the Tellurium simulation starts; this does not change kinetic parameters or equations. Default from bundled SBML initial value."
      }
    ],
    "outputs": [
      {
        "name": "metabolic_pathway_state_1",
        "maps_to": "metabolism_sbml_curien2009_aspartate_metabolism_biomd0000000212_model.metabolic_pathway_state_1"
      },
      {
        "name": "aspartyl_p",
        "maps_to": "metabolism_sbml_curien2009_aspartate_metabolism_biomd0000000212_model.aspartyl_p"
      },
      {
        "name": "threonine",
        "maps_to": "metabolism_sbml_curien2009_aspartate_metabolism_biomd0000000212_model.threonine"
      },
      {
        "name": "aspartate_semialdehyde",
        "maps_to": "metabolism_sbml_curien2009_aspartate_metabolism_biomd0000000212_model.aspartate_semialdehyde"
      },
      {
        "name": "homoserine",
        "maps_to": "metabolism_sbml_curien2009_aspartate_metabolism_biomd0000000212_model.homoserine"
      },
      {
        "name": "observable_values",
        "maps_to": "metabolism_sbml_curien2009_aspartate_metabolism_biomd0000000212_model.observable_values"
      },
      {
        "name": "run_summary",
        "maps_to": "metabolism_sbml_curien2009_aspartate_metabolism_biomd0000000212_model.run_summary"
      },
      {
        "name": "observable_labels",
        "maps_to": "metabolism_sbml_curien2009_aspartate_metabolism_biomd0000000212_model.observable_labels"
      }
    ]
  },
  "title": "Curien2009_Aspartate_Metabolism Lab",
  "models": [
    {
      "path": "owned/models/metabolism_sbml_curien2009_aspartate_metabolism_biomd0000000212_model",
      "alias": "metabolism_sbml_curien2009_aspartate_metabolism_biomd0000000212_model",
      "parameters": {
        "model_path": "data/BIOMD0000000212.xml",
        "integration_step": 0.1
      },
      "provenance": {
        "owned_path": "owned/models/metabolism_sbml_curien2009_aspartate_metabolism_biomd0000000212_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.metabolism_sbml_curien2009_aspartate_metabolism_biomd0000000212_model_observable_values"
      ],
      "from": "metabolism_sbml_curien2009_aspartate_metabolism_biomd0000000212_model.observable_values"
    },
    {
      "to": [
        "visualisation.metabolism_sbml_curien2009_aspartate_metabolism_biomd0000000212_model_run_summary"
      ],
      "from": "metabolism_sbml_curien2009_aspartate_metabolism_biomd0000000212_model.run_summary"
    },
    {
      "to": [
        "visualisation.metabolism_sbml_curien2009_aspartate_metabolism_biomd0000000212_model_observable_labels"
      ],
      "from": "metabolism_sbml_curien2009_aspartate_metabolism_biomd0000000212_model.observable_labels"
    }
  ],
  "runtime": {
    "duration": 10,
    "initial_inputs": {},
    "communication_step": 1
  },
  "description": "This a model described in the article: Understanding the regulation of aspartate metabolism using a model based on measured kinetic parameters. Curien G, Bastien O, Robert-Genthon M, Cornish-Bowden A,.",
  "schema_version": "2.0"
}