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Vizan2013 - TGF pathway long term signaling Lab

About lab

Clean Biosimulant lab for systems signaling model: Vizan2013 - TGF pathway long term signaling. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.

Runtime

Duration1
Comms Step0.1

Runs

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Completed0
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Metadata

Packagevizan2013-tgf-pathway-long-term-signaling-lab
Created2026-05-16
Updated2026-05-16
signalingsystemssystems-biologysbmlfaithfulbiomodels_ebicellular-signalingvisualisation

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_source_defined_rt_state",
        "label": "Initial source-defined RT state",
        "maps_to": "signaling_sbml_vizan2013_tgf_pathway_long_term_signaling_biomd0000000499_model.initial_source_defined_rt_state",
        "description": "Initial level of source-defined RT state. Maps to SBML symbol `species_24`; exposed as a traceable initial-condition perturbation."
      },
      {
        "name": "initial_source_defined_r_state",
        "label": "Initial source-defined R state",
        "maps_to": "signaling_sbml_vizan2013_tgf_pathway_long_term_signaling_biomd0000000499_model.initial_source_defined_r_state",
        "description": "Initial level of source-defined R state. Maps to SBML symbol `species_5`; exposed as a traceable initial-condition perturbation."
      },
      {
        "name": "initial_p_s2c",
        "label": "Initial P S2c",
        "maps_to": "signaling_sbml_vizan2013_tgf_pathway_long_term_signaling_biomd0000000499_model.initial_p_s2c",
        "description": "Initial level of P S2c. Maps to SBML symbol `species_8`; exposed as a traceable initial-condition perturbation."
      }
    ],
    "outputs": [
      {
        "name": "abstract_source_state_s22",
        "label": "Abstract source state S22",
        "maps_to": "signaling_sbml_vizan2013_tgf_pathway_long_term_signaling_biomd0000000499_model.abstract_source_state_s22",
        "description": "Abstract source state S22. Maps to SBML symbol `species_1` and is emitted in native SBML units."
      },
      {
        "name": "abstract_source_state_s24",
        "label": "Abstract source state S24",
        "maps_to": "signaling_sbml_vizan2013_tgf_pathway_long_term_signaling_biomd0000000499_model.abstract_source_state_s24",
        "description": "Abstract source state S24. Maps to SBML symbol `species_2` and is emitted in native SBML units."
      },
      {
        "name": "p_s2tot",
        "label": "P S2tot",
        "maps_to": "signaling_sbml_vizan2013_tgf_pathway_long_term_signaling_biomd0000000499_model.p_s2tot",
        "description": "P S2tot. Maps to SBML symbol `species_3` and is emitted in native SBML units."
      },
      {
        "name": "state",
        "label": "Observable state",
        "maps_to": "signaling_sbml_vizan2013_tgf_pathway_long_term_signaling_biomd0000000499_model.state"
      },
      {
        "name": "summary",
        "label": "Simulation summary",
        "maps_to": "signaling_sbml_vizan2013_tgf_pathway_long_term_signaling_biomd0000000499_model.summary"
      },
      {
        "name": "species_labels",
        "label": "Observable labels",
        "maps_to": "signaling_sbml_vizan2013_tgf_pathway_long_term_signaling_biomd0000000499_model.species_labels"
      }
    ]
  },
  "tags": [
    "signaling",
    "systems",
    "systems-biology",
    "sbml",
    "faithful",
    "biomodels_ebi",
    "cellular-signaling"
  ],
  "title": "Vizan2013 - TGF pathway long term signaling Lab",
  "models": [
    {
      "path": "owned/models/signaling_sbml_vizan2013_tgf_pathway_long_term_signaling_biomd0000000499_model",
      "alias": "signaling_sbml_vizan2013_tgf_pathway_long_term_signaling_biomd0000000499_model",
      "provenance": {
        "owned_path": "owned/models/signaling_sbml_vizan2013_tgf_pathway_long_term_signaling_biomd0000000499_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.signaling_sbml_vizan2013_tgf_pathway_long_term_signaling_biomd0000000499_model_state"
      ],
      "from": "signaling_sbml_vizan2013_tgf_pathway_long_term_signaling_biomd0000000499_model.state"
    },
    {
      "to": [
        "visualisation.signaling_sbml_vizan2013_tgf_pathway_long_term_signaling_biomd0000000499_model_summary"
      ],
      "from": "signaling_sbml_vizan2013_tgf_pathway_long_term_signaling_biomd0000000499_model.summary"
    },
    {
      "to": [
        "visualisation.signaling_sbml_vizan2013_tgf_pathway_long_term_signaling_biomd0000000499_model_species_labels"
      ],
      "from": "signaling_sbml_vizan2013_tgf_pathway_long_term_signaling_biomd0000000499_model.species_labels"
    }
  ],
  "runtime": {
    "duration": 1,
    "initial_inputs": {},
    "communication_step": 0.1
  },
  "description": "Clean Biosimulant lab for systems signaling model: Vizan2013 - TGF pathway long term signaling. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.",
  "schema_version": "2.0"
}

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