About lab
Clean Biosimulant lab for systems signaling model: Vizan2013 - TGF pathway long term signaling. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.
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Duration1
Comms Step0.1
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Metadata
Packagevizan2013-tgf-pathway-long-term-signaling-lab
Created2026-05-16
Updated2026-05-16
signalingsystemssystems-biologysbmlfaithfulbiomodels_ebicellular-signalingvisualisation
Manifest
{
"io": {
"inputs": [
{
"name": "initial_source_defined_rt_state",
"label": "Initial source-defined RT state",
"maps_to": "signaling_sbml_vizan2013_tgf_pathway_long_term_signaling_biomd0000000499_model.initial_source_defined_rt_state",
"description": "Initial level of source-defined RT state. Maps to SBML symbol `species_24`; exposed as a traceable initial-condition perturbation."
},
{
"name": "initial_source_defined_r_state",
"label": "Initial source-defined R state",
"maps_to": "signaling_sbml_vizan2013_tgf_pathway_long_term_signaling_biomd0000000499_model.initial_source_defined_r_state",
"description": "Initial level of source-defined R state. Maps to SBML symbol `species_5`; exposed as a traceable initial-condition perturbation."
},
{
"name": "initial_p_s2c",
"label": "Initial P S2c",
"maps_to": "signaling_sbml_vizan2013_tgf_pathway_long_term_signaling_biomd0000000499_model.initial_p_s2c",
"description": "Initial level of P S2c. Maps to SBML symbol `species_8`; exposed as a traceable initial-condition perturbation."
}
],
"outputs": [
{
"name": "abstract_source_state_s22",
"label": "Abstract source state S22",
"maps_to": "signaling_sbml_vizan2013_tgf_pathway_long_term_signaling_biomd0000000499_model.abstract_source_state_s22",
"description": "Abstract source state S22. Maps to SBML symbol `species_1` and is emitted in native SBML units."
},
{
"name": "abstract_source_state_s24",
"label": "Abstract source state S24",
"maps_to": "signaling_sbml_vizan2013_tgf_pathway_long_term_signaling_biomd0000000499_model.abstract_source_state_s24",
"description": "Abstract source state S24. Maps to SBML symbol `species_2` and is emitted in native SBML units."
},
{
"name": "p_s2tot",
"label": "P S2tot",
"maps_to": "signaling_sbml_vizan2013_tgf_pathway_long_term_signaling_biomd0000000499_model.p_s2tot",
"description": "P S2tot. Maps to SBML symbol `species_3` and is emitted in native SBML units."
},
{
"name": "state",
"label": "Observable state",
"maps_to": "signaling_sbml_vizan2013_tgf_pathway_long_term_signaling_biomd0000000499_model.state"
},
{
"name": "summary",
"label": "Simulation summary",
"maps_to": "signaling_sbml_vizan2013_tgf_pathway_long_term_signaling_biomd0000000499_model.summary"
},
{
"name": "species_labels",
"label": "Observable labels",
"maps_to": "signaling_sbml_vizan2013_tgf_pathway_long_term_signaling_biomd0000000499_model.species_labels"
}
]
},
"tags": [
"signaling",
"systems",
"systems-biology",
"sbml",
"faithful",
"biomodels_ebi",
"cellular-signaling"
],
"title": "Vizan2013 - TGF pathway long term signaling Lab",
"models": [
{
"path": "owned/models/signaling_sbml_vizan2013_tgf_pathway_long_term_signaling_biomd0000000499_model",
"alias": "signaling_sbml_vizan2013_tgf_pathway_long_term_signaling_biomd0000000499_model",
"provenance": {
"owned_path": "owned/models/signaling_sbml_vizan2013_tgf_pathway_long_term_signaling_biomd0000000499_model"
}
},
{
"path": "owned/models/visualisation",
"alias": "visualisation",
"provenance": {
"owned_path": "owned/models/visualisation"
}
}
],
"wiring": [
{
"to": [
"visualisation.signaling_sbml_vizan2013_tgf_pathway_long_term_signaling_biomd0000000499_model_state"
],
"from": "signaling_sbml_vizan2013_tgf_pathway_long_term_signaling_biomd0000000499_model.state"
},
{
"to": [
"visualisation.signaling_sbml_vizan2013_tgf_pathway_long_term_signaling_biomd0000000499_model_summary"
],
"from": "signaling_sbml_vizan2013_tgf_pathway_long_term_signaling_biomd0000000499_model.summary"
},
{
"to": [
"visualisation.signaling_sbml_vizan2013_tgf_pathway_long_term_signaling_biomd0000000499_model_species_labels"
],
"from": "signaling_sbml_vizan2013_tgf_pathway_long_term_signaling_biomd0000000499_model.species_labels"
}
],
"runtime": {
"duration": 1,
"initial_inputs": {},
"communication_step": 0.1
},
"description": "Clean Biosimulant lab for systems signaling model: Vizan2013 - TGF pathway long term signaling. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.",
"schema_version": "2.0"
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