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Parmar2019 Iron Mouse Pv3 Lab

About lab

Iron Mouse PV3 'A computational model to understand mouse iron physiology and diseases' By Jignesh Parmar and Pedro Mendes Base model This is a dynamic model of iron distribution in mice, covering sev. It can be used to explore systemsbiology parmar2019 iron mouse pv3 model1805140003 dynamics and compare simulation behavior across conditions.

Runtime

Duration1
Comms Step0.1

Runs

Total0
Completed0
Failed0

Metadata

Packageparmar2019-iron-mouse-pv3-lab
Created2026-05-17
Updated2026-05-17
physiologysystemsbiologysbmlbiomodels_ebifaithfulcuratedvisualisation

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_fe_rbc",
        "label": "Initial Fe Rbc",
        "maps_to": "systemsbiology_sbml_parmar2019_iron_mouse_pv3_model1805140003_model.initial_fe_rbc",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `FeRBC`."
      },
      {
        "name": "initial_fe_duo",
        "label": "Initial Fe Duo",
        "maps_to": "systemsbiology_sbml_parmar2019_iron_mouse_pv3_model1805140003_model.initial_fe_duo",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `FeDuo`."
      },
      {
        "name": "initial_fe_spleen",
        "label": "Initial Fe Spleen",
        "maps_to": "systemsbiology_sbml_parmar2019_iron_mouse_pv3_model1805140003_model.initial_fe_spleen",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `FeSpleen`."
      },
      {
        "name": "initial_fe_bm",
        "label": "Initial Fe Bm",
        "maps_to": "systemsbiology_sbml_parmar2019_iron_mouse_pv3_model1805140003_model.initial_fe_bm",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `FeBM`."
      },
      {
        "name": "initial_fe_liver",
        "label": "Initial Fe Liver",
        "maps_to": "systemsbiology_sbml_parmar2019_iron_mouse_pv3_model1805140003_model.initial_fe_liver",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `FeLiver`."
      },
      {
        "name": "initial_fe_rest",
        "label": "Initial Fe Rest",
        "maps_to": "systemsbiology_sbml_parmar2019_iron_mouse_pv3_model1805140003_model.initial_fe_rest",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `FeRest`."
      }
    ],
    "outputs": [
      {
        "name": "state",
        "maps_to": "systemsbiology_sbml_parmar2019_iron_mouse_pv3_model1805140003_model.state"
      },
      {
        "name": "summary",
        "maps_to": "systemsbiology_sbml_parmar2019_iron_mouse_pv3_model1805140003_model.summary"
      },
      {
        "name": "species_labels",
        "maps_to": "systemsbiology_sbml_parmar2019_iron_mouse_pv3_model1805140003_model.species_labels"
      },
      {
        "name": "fe_rbc",
        "maps_to": "systemsbiology_sbml_parmar2019_iron_mouse_pv3_model1805140003_model.fe_rbc"
      },
      {
        "name": "fe_duo",
        "maps_to": "systemsbiology_sbml_parmar2019_iron_mouse_pv3_model1805140003_model.fe_duo"
      },
      {
        "name": "fe_spleen",
        "maps_to": "systemsbiology_sbml_parmar2019_iron_mouse_pv3_model1805140003_model.fe_spleen"
      },
      {
        "name": "fe_bm",
        "maps_to": "systemsbiology_sbml_parmar2019_iron_mouse_pv3_model1805140003_model.fe_bm"
      },
      {
        "name": "fe_liver",
        "maps_to": "systemsbiology_sbml_parmar2019_iron_mouse_pv3_model1805140003_model.fe_liver"
      },
      {
        "name": "fe_rest",
        "maps_to": "systemsbiology_sbml_parmar2019_iron_mouse_pv3_model1805140003_model.fe_rest"
      }
    ]
  },
  "tags": [
    "physiology",
    "systemsbiology",
    "sbml",
    "biomodels_ebi",
    "faithful",
    "curated"
  ],
  "title": "Parmar2019 Iron Mouse Pv3 Lab",
  "models": [
    {
      "path": "owned/models/systemsbiology_sbml_parmar2019_iron_mouse_pv3_model1805140003_model",
      "alias": "systemsbiology_sbml_parmar2019_iron_mouse_pv3_model1805140003_model",
      "provenance": {
        "owned_path": "owned/models/systemsbiology_sbml_parmar2019_iron_mouse_pv3_model1805140003_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.systemsbiology_sbml_parmar2019_iron_mouse_pv3_model1805140003_model_state"
      ],
      "from": "systemsbiology_sbml_parmar2019_iron_mouse_pv3_model1805140003_model.state"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_parmar2019_iron_mouse_pv3_model1805140003_model_summary"
      ],
      "from": "systemsbiology_sbml_parmar2019_iron_mouse_pv3_model1805140003_model.summary"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_parmar2019_iron_mouse_pv3_model1805140003_model_species_labels"
      ],
      "from": "systemsbiology_sbml_parmar2019_iron_mouse_pv3_model1805140003_model.species_labels"
    }
  ],
  "runtime": {
    "duration": 1,
    "initial_inputs": {},
    "communication_step": 0.1
  },
  "description": "Iron Mouse PV3 'A computational model to understand mouse iron physiology and diseases' By Jignesh Parmar and Pedro Mendes Base model This is a dynamic model of iron distribution in mice, covering sev. It can be used to explore systemsbiology parmar2019 iron mouse pv3 model1805140003 dynamics and compare simulation behavior across conditions.",
  "schema_version": "2.0"
}

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