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Bhalla2004_PKC_2003 Lab

About lab

Clean Biosimulant lab for systems signaling model: Bhalla2004_PKC_2003. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.

Runtime

Duration1
Comms Step0.1

Runs

Total0
Completed0
Failed0

Metadata

Packagebhalla2004-pkc-2003-lab
Created2026-05-16
Updated2026-05-16
signalingsystemssystems-biologysbmlfaithfulbiomodels_ebicamp-pkagpcrneurosciencephysiologyvisualisation

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_dag",
        "label": "Initial DAG",
        "maps_to": "signaling_sbml_bhalla2004_pkc_2003_model9080388197_model.initial_dag",
        "description": "Initial level of DAG. Maps to SBML symbol `DAG`; exposed as a traceable initial-condition perturbation."
      },
      {
        "name": "initial_source_defined_aa_state",
        "label": "Initial source-defined AA state",
        "maps_to": "signaling_sbml_bhalla2004_pkc_2003_model9080388197_model.initial_source_defined_aa_state",
        "description": "Initial level of source-defined AA state. Maps to SBML symbol `AA`; exposed as a traceable initial-condition perturbation."
      },
      {
        "name": "initial_calcium",
        "label": "Initial calcium",
        "maps_to": "signaling_sbml_bhalla2004_pkc_2003_model9080388197_model.initial_calcium",
        "description": "Initial level of calcium. Maps to SBML symbol `Ca`; exposed as a traceable initial-condition perturbation."
      }
    ],
    "outputs": [
      {
        "name": "calcium_bound_pkc",
        "label": "Calcium bound PKC",
        "maps_to": "signaling_sbml_bhalla2004_pkc_2003_model9080388197_model.calcium_bound_pkc",
        "description": "Calcium bound PKC. Maps to SBML symbol `PKC_slash_PKC_minus_Ca` and is emitted in native SBML units."
      },
      {
        "name": "arachidonic_acid_active_calcium_bound_pkc",
        "label": "Arachidonic Acid active Calcium bound PKC",
        "maps_to": "signaling_sbml_bhalla2004_pkc_2003_model9080388197_model.arachidonic_acid_active_calcium_bound_pkc",
        "description": "Arachidonic Acid active Calcium bound PKC. Maps to SBML symbol `PKC_slash_PKC_minus_Ca_minus_AA_star_` and is emitted in native SBML units."
      },
      {
        "name": "membrane_active_calcium_bound_pkc",
        "label": "Membrane active Calcium bound PKC",
        "maps_to": "signaling_sbml_bhalla2004_pkc_2003_model9080388197_model.membrane_active_calcium_bound_pkc",
        "description": "Membrane active Calcium bound PKC. Maps to SBML symbol `PKC_slash_PKC_minus_Ca_minus_memb_star_` and is emitted in native SBML units."
      },
      {
        "name": "state",
        "label": "Observable state",
        "maps_to": "signaling_sbml_bhalla2004_pkc_2003_model9080388197_model.state"
      },
      {
        "name": "summary",
        "label": "Simulation summary",
        "maps_to": "signaling_sbml_bhalla2004_pkc_2003_model9080388197_model.summary"
      },
      {
        "name": "species_labels",
        "label": "Observable labels",
        "maps_to": "signaling_sbml_bhalla2004_pkc_2003_model9080388197_model.species_labels"
      }
    ]
  },
  "tags": [
    "signaling",
    "systems",
    "systems-biology",
    "sbml",
    "faithful",
    "biomodels_ebi",
    "camp-pka",
    "gpcr",
    "neuroscience",
    "physiology"
  ],
  "title": "Bhalla2004_PKC_2003 Lab",
  "models": [
    {
      "path": "owned/models/signaling_sbml_bhalla2004_pkc_2003_model9080388197_model",
      "alias": "signaling_sbml_bhalla2004_pkc_2003_model9080388197_model",
      "provenance": {
        "owned_path": "owned/models/signaling_sbml_bhalla2004_pkc_2003_model9080388197_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.signaling_sbml_bhalla2004_pkc_2003_model9080388197_model_state"
      ],
      "from": "signaling_sbml_bhalla2004_pkc_2003_model9080388197_model.state"
    },
    {
      "to": [
        "visualisation.signaling_sbml_bhalla2004_pkc_2003_model9080388197_model_summary"
      ],
      "from": "signaling_sbml_bhalla2004_pkc_2003_model9080388197_model.summary"
    },
    {
      "to": [
        "visualisation.signaling_sbml_bhalla2004_pkc_2003_model9080388197_model_species_labels"
      ],
      "from": "signaling_sbml_bhalla2004_pkc_2003_model9080388197_model.species_labels"
    }
  ],
  "runtime": {
    "duration": 1,
    "initial_inputs": {},
    "communication_step": 0.1
  },
  "description": "Clean Biosimulant lab for systems signaling model: Bhalla2004_PKC_2003. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.",
  "schema_version": "2.0"
}

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