About lab
Clean Biosimulant lab for systems signaling model: Bhalla2004_PKC_2003. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.
Runtime
Duration1
Comms Step0.1
Runs
Total0
Completed0
Failed0
Metadata
Packagebhalla2004-pkc-2003-lab
Created2026-05-16
Updated2026-05-16
signalingsystemssystems-biologysbmlfaithfulbiomodels_ebicamp-pkagpcrneurosciencephysiologyvisualisation
Manifest
{
"io": {
"inputs": [
{
"name": "initial_dag",
"label": "Initial DAG",
"maps_to": "signaling_sbml_bhalla2004_pkc_2003_model9080388197_model.initial_dag",
"description": "Initial level of DAG. Maps to SBML symbol `DAG`; exposed as a traceable initial-condition perturbation."
},
{
"name": "initial_source_defined_aa_state",
"label": "Initial source-defined AA state",
"maps_to": "signaling_sbml_bhalla2004_pkc_2003_model9080388197_model.initial_source_defined_aa_state",
"description": "Initial level of source-defined AA state. Maps to SBML symbol `AA`; exposed as a traceable initial-condition perturbation."
},
{
"name": "initial_calcium",
"label": "Initial calcium",
"maps_to": "signaling_sbml_bhalla2004_pkc_2003_model9080388197_model.initial_calcium",
"description": "Initial level of calcium. Maps to SBML symbol `Ca`; exposed as a traceable initial-condition perturbation."
}
],
"outputs": [
{
"name": "calcium_bound_pkc",
"label": "Calcium bound PKC",
"maps_to": "signaling_sbml_bhalla2004_pkc_2003_model9080388197_model.calcium_bound_pkc",
"description": "Calcium bound PKC. Maps to SBML symbol `PKC_slash_PKC_minus_Ca` and is emitted in native SBML units."
},
{
"name": "arachidonic_acid_active_calcium_bound_pkc",
"label": "Arachidonic Acid active Calcium bound PKC",
"maps_to": "signaling_sbml_bhalla2004_pkc_2003_model9080388197_model.arachidonic_acid_active_calcium_bound_pkc",
"description": "Arachidonic Acid active Calcium bound PKC. Maps to SBML symbol `PKC_slash_PKC_minus_Ca_minus_AA_star_` and is emitted in native SBML units."
},
{
"name": "membrane_active_calcium_bound_pkc",
"label": "Membrane active Calcium bound PKC",
"maps_to": "signaling_sbml_bhalla2004_pkc_2003_model9080388197_model.membrane_active_calcium_bound_pkc",
"description": "Membrane active Calcium bound PKC. Maps to SBML symbol `PKC_slash_PKC_minus_Ca_minus_memb_star_` and is emitted in native SBML units."
},
{
"name": "state",
"label": "Observable state",
"maps_to": "signaling_sbml_bhalla2004_pkc_2003_model9080388197_model.state"
},
{
"name": "summary",
"label": "Simulation summary",
"maps_to": "signaling_sbml_bhalla2004_pkc_2003_model9080388197_model.summary"
},
{
"name": "species_labels",
"label": "Observable labels",
"maps_to": "signaling_sbml_bhalla2004_pkc_2003_model9080388197_model.species_labels"
}
]
},
"tags": [
"signaling",
"systems",
"systems-biology",
"sbml",
"faithful",
"biomodels_ebi",
"camp-pka",
"gpcr",
"neuroscience",
"physiology"
],
"title": "Bhalla2004_PKC_2003 Lab",
"models": [
{
"path": "owned/models/signaling_sbml_bhalla2004_pkc_2003_model9080388197_model",
"alias": "signaling_sbml_bhalla2004_pkc_2003_model9080388197_model",
"provenance": {
"owned_path": "owned/models/signaling_sbml_bhalla2004_pkc_2003_model9080388197_model"
}
},
{
"path": "owned/models/visualisation",
"alias": "visualisation",
"provenance": {
"owned_path": "owned/models/visualisation"
}
}
],
"wiring": [
{
"to": [
"visualisation.signaling_sbml_bhalla2004_pkc_2003_model9080388197_model_state"
],
"from": "signaling_sbml_bhalla2004_pkc_2003_model9080388197_model.state"
},
{
"to": [
"visualisation.signaling_sbml_bhalla2004_pkc_2003_model9080388197_model_summary"
],
"from": "signaling_sbml_bhalla2004_pkc_2003_model9080388197_model.summary"
},
{
"to": [
"visualisation.signaling_sbml_bhalla2004_pkc_2003_model9080388197_model_species_labels"
],
"from": "signaling_sbml_bhalla2004_pkc_2003_model9080388197_model.species_labels"
}
],
"runtime": {
"duration": 1,
"initial_inputs": {},
"communication_step": 0.1
},
"description": "Clean Biosimulant lab for systems signaling model: Bhalla2004_PKC_2003. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.",
"schema_version": "2.0"
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