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Jenkinson2011 Egf Mapk Lab

About lab

This is a model described in the article: Thermodynamically Consistent Model Calibration in Chemical Kinetics. It can be used to explore systemsbiology jenkinson2011 egf mapk BioModels0000000399 dynamics and compare simulation behavior across conditions.

Runtime

Duration1
Comms Step0.1

Runs

Total0
Completed0
Failed0

Metadata

Packagejenkinson2011-egf-mapk-lab
Created2026-05-17
Updated2026-05-17
signalingsystemsbiologysbmlbiomodels_ebifaithfulcuratedvisualisation

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_model_state_mek",
        "label": "Initial Model State Mek",
        "maps_to": "systemsbiology_sbml_jenkinson2011_egf_mapk_biomd0000000399_model.initial_model_state_mek",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `x47`."
      },
      {
        "name": "initial_model_state_erk",
        "label": "Initial Model State ERK",
        "maps_to": "systemsbiology_sbml_jenkinson2011_egf_mapk_biomd0000000399_model.initial_model_state_erk",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `x55`."
      },
      {
        "name": "initial_phosphotase3",
        "label": "Initial Phosphotase3",
        "maps_to": "systemsbiology_sbml_jenkinson2011_egf_mapk_biomd0000000399_model.initial_phosphotase3",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `x60`."
      },
      {
        "name": "initial_model_state_shc",
        "label": "Initial Model State Shc",
        "maps_to": "systemsbiology_sbml_jenkinson2011_egf_mapk_biomd0000000399_model.initial_model_state_shc",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `x31`."
      },
      {
        "name": "initial_prot",
        "label": "Initial Prot",
        "maps_to": "systemsbiology_sbml_jenkinson2011_egf_mapk_biomd0000000399_model.initial_prot",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `x12`."
      },
      {
        "name": "initial_ras_gdp",
        "label": "Initial RAS Gdp",
        "maps_to": "systemsbiology_sbml_jenkinson2011_egf_mapk_biomd0000000399_model.initial_ras_gdp",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `x26`."
      }
    ],
    "outputs": [
      {
        "name": "state",
        "maps_to": "systemsbiology_sbml_jenkinson2011_egf_mapk_biomd0000000399_model.state"
      },
      {
        "name": "summary",
        "maps_to": "systemsbiology_sbml_jenkinson2011_egf_mapk_biomd0000000399_model.summary"
      },
      {
        "name": "species_labels",
        "maps_to": "systemsbiology_sbml_jenkinson2011_egf_mapk_biomd0000000399_model.species_labels"
      },
      {
        "name": "mek",
        "maps_to": "systemsbiology_sbml_jenkinson2011_egf_mapk_biomd0000000399_model.mek"
      },
      {
        "name": "erk",
        "maps_to": "systemsbiology_sbml_jenkinson2011_egf_mapk_biomd0000000399_model.erk"
      },
      {
        "name": "phosphotase3",
        "maps_to": "systemsbiology_sbml_jenkinson2011_egf_mapk_biomd0000000399_model.phosphotase3"
      },
      {
        "name": "shc",
        "maps_to": "systemsbiology_sbml_jenkinson2011_egf_mapk_biomd0000000399_model.shc"
      },
      {
        "name": "prot",
        "maps_to": "systemsbiology_sbml_jenkinson2011_egf_mapk_biomd0000000399_model.prot"
      },
      {
        "name": "ras_gdp",
        "maps_to": "systemsbiology_sbml_jenkinson2011_egf_mapk_biomd0000000399_model.ras_gdp"
      }
    ]
  },
  "tags": [
    "signaling",
    "systemsbiology",
    "sbml",
    "biomodels_ebi",
    "faithful",
    "curated"
  ],
  "title": "Jenkinson2011 Egf Mapk Lab",
  "models": [
    {
      "path": "owned/models/systemsbiology_sbml_jenkinson2011_egf_mapk_biomd0000000399_model",
      "alias": "systemsbiology_sbml_jenkinson2011_egf_mapk_biomd0000000399_model",
      "provenance": {
        "owned_path": "owned/models/systemsbiology_sbml_jenkinson2011_egf_mapk_biomd0000000399_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.systemsbiology_sbml_jenkinson2011_egf_mapk_biomd0000000399_model_state"
      ],
      "from": "systemsbiology_sbml_jenkinson2011_egf_mapk_biomd0000000399_model.state"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_jenkinson2011_egf_mapk_biomd0000000399_model_summary"
      ],
      "from": "systemsbiology_sbml_jenkinson2011_egf_mapk_biomd0000000399_model.summary"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_jenkinson2011_egf_mapk_biomd0000000399_model_species_labels"
      ],
      "from": "systemsbiology_sbml_jenkinson2011_egf_mapk_biomd0000000399_model.species_labels"
    }
  ],
  "runtime": {
    "duration": 1,
    "initial_inputs": {},
    "communication_step": 0.1
  },
  "description": "This is a model described in the article: Thermodynamically Consistent Model Calibration in Chemical Kinetics. It can be used to explore systemsbiology jenkinson2011 egf mapk BioModels0000000399 dynamics and compare simulation behavior across conditions.",
  "schema_version": "2.0"
}

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