Sokol2025 - Kinetic model of the first three reactions of glycolysis Lab

{
  "io": {
    "inputs": [
      {
        "name": "initial_adp",
        "units": "native SBML value",
        "default": 0.00000102876420481711,
        "maps_to": "metabolism_sbml_sokol2025_kinetic_model_of_the_first_three_react_model2502210002_model.initial_adp",
        "description": "Initial condition for adp. Maps to bundled SBML symbol `ADP`. Applied before the Tellurium simulation starts; this does not change kinetic parameters or equations. Default from bundled SBML initial value."
      },
      {
        "name": "initial_atp",
        "units": "native SBML value",
        "default": 24.9999838070557,
        "maps_to": "metabolism_sbml_sokol2025_kinetic_model_of_the_first_three_react_model2502210002_model.initial_atp",
        "description": "Initial condition for atp. Maps to bundled SBML symbol `ATP`. Applied before the Tellurium simulation starts; this does not change kinetic parameters or equations. Default from bundled SBML initial value."
      },
      {
        "name": "initial_glucose_6_phosphate",
        "units": "native SBML value",
        "default": 0.125387382474129,
        "maps_to": "metabolism_sbml_sokol2025_kinetic_model_of_the_first_three_react_model2502210002_model.initial_glucose_6_phosphate",
        "description": "Initial condition for glucose 6 phosphate. Maps to bundled SBML symbol `G6P`. Applied before the Tellurium simulation starts; this does not change kinetic parameters or equations. Default from bundled SBML initial value."
      },
      {
        "name": "initial_glucose",
        "units": "native SBML value",
        "default": 5.1381410880857,
        "maps_to": "metabolism_sbml_sokol2025_kinetic_model_of_the_first_three_react_model2502210002_model.initial_glucose",
        "description": "Initial condition for glucose. Maps to bundled SBML symbol `GLC`. Applied before the Tellurium simulation starts; this does not change kinetic parameters or equations. Default from bundled SBML initial value."
      },
      {
        "name": "initial_fructose_6_phosphate",
        "units": "native SBML value",
        "default": 0.999998114992648,
        "maps_to": "metabolism_sbml_sokol2025_kinetic_model_of_the_first_three_react_model2502210002_model.initial_fructose_6_phosphate",
        "description": "Initial condition for fructose 6 phosphate. Maps to bundled SBML symbol `F6P`. Applied before the Tellurium simulation starts; this does not change kinetic parameters or equations. Default from bundled SBML initial value."
      }
    ],
    "outputs": [
      {
        "name": "adp",
        "maps_to": "metabolism_sbml_sokol2025_kinetic_model_of_the_first_three_react_model2502210002_model.adp"
      },
      {
        "name": "atp",
        "maps_to": "metabolism_sbml_sokol2025_kinetic_model_of_the_first_three_react_model2502210002_model.atp"
      },
      {
        "name": "glucose_6_phosphate",
        "maps_to": "metabolism_sbml_sokol2025_kinetic_model_of_the_first_three_react_model2502210002_model.glucose_6_phosphate"
      },
      {
        "name": "glucose",
        "maps_to": "metabolism_sbml_sokol2025_kinetic_model_of_the_first_three_react_model2502210002_model.glucose"
      },
      {
        "name": "fructose_6_phosphate",
        "maps_to": "metabolism_sbml_sokol2025_kinetic_model_of_the_first_three_react_model2502210002_model.fructose_6_phosphate"
      },
      {
        "name": "observable_values",
        "maps_to": "metabolism_sbml_sokol2025_kinetic_model_of_the_first_three_react_model2502210002_model.observable_values"
      },
      {
        "name": "run_summary",
        "maps_to": "metabolism_sbml_sokol2025_kinetic_model_of_the_first_three_react_model2502210002_model.run_summary"
      },
      {
        "name": "observable_labels",
        "maps_to": "metabolism_sbml_sokol2025_kinetic_model_of_the_first_three_react_model2502210002_model.observable_labels"
      }
    ]
  },
  "title": "Sokol2025 - Kinetic model of the first three reactions of glycolysis Lab",
  "models": [
    {
      "path": "owned/models/metabolism_sbml_sokol2025_kinetic_model_of_the_first_three_react_model2502210002_model",
      "alias": "metabolism_sbml_sokol2025_kinetic_model_of_the_first_three_react_model2502210002_model",
      "parameters": {
        "model_path": "data/MODEL2502210002.xml",
        "integration_step": 0.1
      },
      "provenance": {
        "owned_path": "owned/models/metabolism_sbml_sokol2025_kinetic_model_of_the_first_three_react_model2502210002_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.metabolism_sbml_sokol2025_kinetic_model_of_the_first_three_react_model2502210002_model_observable_values"
      ],
      "from": "metabolism_sbml_sokol2025_kinetic_model_of_the_first_three_react_model2502210002_model.observable_values"
    },
    {
      "to": [
        "visualisation.metabolism_sbml_sokol2025_kinetic_model_of_the_first_three_react_model2502210002_model_run_summary"
      ],
      "from": "metabolism_sbml_sokol2025_kinetic_model_of_the_first_three_react_model2502210002_model.run_summary"
    },
    {
      "to": [
        "visualisation.metabolism_sbml_sokol2025_kinetic_model_of_the_first_three_react_model2502210002_model_observable_labels"
      ],
      "from": "metabolism_sbml_sokol2025_kinetic_model_of_the_first_three_react_model2502210002_model.observable_labels"
    }
  ],
  "runtime": {
    "duration": 10,
    "initial_inputs": {},
    "communication_step": 1
  },
  "description": "Kinetic model of the first three reactions of glycolysis. It can be used to explore metabolic flux dynamics and compare pathway behavior across conditions.",
  "schema_version": "2.0"
}