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Ontah2019 - Dynamic analysis of a tumor treatment model using oncolytic virus and chemotherapy with saturated infection rate Lab

About lab

This is a mathematical model describing the treatment of tumors using oncolytic virus and chemotherapy. The model is comprised of nonlinear ordinary differential equations describing the interactions.

Runtime

Duration10
Comms Step1

Runs

Total0
Completed0
Failed0

Metadata

Packageontah2019-dynamic-analysis-of-a-tumor-treatment-model-using-onco
Created2026-05-16
Updated2026-05-16
biomodels_ebichemotherapycurateddrug-responsefaithfulimmunotherapyoncologypharmacologyphysiologysbmlsystemsbiologytumor-growthvirotherapyvisualisation

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_uninfected_tumor_cells",
        "label": "Uninfected Tumor Cells",
        "units": "native SBML value",
        "default": 100,
        "maps_to": "oncology_sbml_ontah2019_dynamic_analysis_of_a_tumor_treatment_biomd0000000877_model.initial_uninfected_tumor_cells",
        "description": "Initial Uninfected Tumor Cells. Sets the initial value of bundled SBML symbol `U`."
      },
      {
        "name": "initial_infected_tumor_cells",
        "label": "Infected Tumor Cells",
        "units": "native SBML value",
        "default": 10,
        "maps_to": "oncology_sbml_ontah2019_dynamic_analysis_of_a_tumor_treatment_biomd0000000877_model.initial_infected_tumor_cells",
        "description": "Initial Infected Tumor Cells. Sets the initial value of bundled SBML symbol `I`."
      },
      {
        "name": "initial_virus_load",
        "label": "Virus Load",
        "units": "native SBML value",
        "default": 10,
        "maps_to": "oncology_sbml_ontah2019_dynamic_analysis_of_a_tumor_treatment_biomd0000000877_model.initial_virus_load",
        "description": "Initial Virus Load. Sets the initial value of bundled SBML symbol `V`."
      },
      {
        "name": "initial_chemotherapy_level",
        "label": "Chemotherapy Level",
        "units": "native SBML value",
        "default": 30,
        "maps_to": "oncology_sbml_ontah2019_dynamic_analysis_of_a_tumor_treatment_biomd0000000877_model.initial_chemotherapy_level",
        "description": "Initial Chemotherapy Level. Sets the initial value of bundled SBML symbol `C`."
      }
    ],
    "outputs": [
      {
        "name": "uninfected_tumor_cells",
        "maps_to": "oncology_sbml_ontah2019_dynamic_analysis_of_a_tumor_treatment_biomd0000000877_model.uninfected_tumor_cells",
        "description": "Uninfected Tumor Cells observable. Maps to SBML symbol `U`."
      },
      {
        "name": "infected_tumor_cells",
        "maps_to": "oncology_sbml_ontah2019_dynamic_analysis_of_a_tumor_treatment_biomd0000000877_model.infected_tumor_cells",
        "description": "Infected Tumor Cells observable. Maps to SBML symbol `I`."
      },
      {
        "name": "virus_load",
        "maps_to": "oncology_sbml_ontah2019_dynamic_analysis_of_a_tumor_treatment_biomd0000000877_model.virus_load",
        "description": "Virus Load observable. Maps to SBML symbol `V`."
      },
      {
        "name": "chemotherapy_level",
        "maps_to": "oncology_sbml_ontah2019_dynamic_analysis_of_a_tumor_treatment_biomd0000000877_model.chemotherapy_level",
        "description": "Chemotherapy Level observable. Maps to SBML symbol `C`."
      },
      {
        "name": "state",
        "maps_to": "oncology_sbml_ontah2019_dynamic_analysis_of_a_tumor_treatment_biomd0000000877_model.state",
        "description": "Full raw SBML observable record for reproducibility and downstream visualisation."
      },
      {
        "name": "summary",
        "maps_to": "oncology_sbml_ontah2019_dynamic_analysis_of_a_tumor_treatment_biomd0000000877_model.summary",
        "description": "Change and peak summary across the simulated SBML observables."
      },
      {
        "name": "species_labels",
        "maps_to": "oncology_sbml_ontah2019_dynamic_analysis_of_a_tumor_treatment_biomd0000000877_model.species_labels",
        "description": "Mapping from selected raw SBML observable symbols to display labels."
      }
    ]
  },
  "tags": [
    "biomodels_ebi",
    "chemotherapy",
    "curated",
    "drug-response",
    "faithful",
    "immunotherapy",
    "oncology",
    "pharmacology",
    "physiology",
    "sbml",
    "systemsbiology",
    "tumor-growth",
    "virotherapy"
  ],
  "title": "Ontah2019 - Dynamic analysis of a tumor treatment model using oncolytic virus and chemotherapy with saturated infection rate Lab",
  "models": [
    {
      "path": "owned/models/oncology_sbml_ontah2019_dynamic_analysis_of_a_tumor_treatment_biomd0000000877_model",
      "alias": "oncology_sbml_ontah2019_dynamic_analysis_of_a_tumor_treatment_biomd0000000877_model",
      "provenance": {
        "owned_path": "owned/models/oncology_sbml_ontah2019_dynamic_analysis_of_a_tumor_treatment_biomd0000000877_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.oncology_sbml_ontah2019_dynamic_analysis_of_a_tumor_treatment_biomd0000000877_model_state"
      ],
      "from": "oncology_sbml_ontah2019_dynamic_analysis_of_a_tumor_treatment_biomd0000000877_model.state"
    },
    {
      "to": [
        "visualisation.oncology_sbml_ontah2019_dynamic_analysis_of_a_tumor_treatment_biomd0000000877_model_summary"
      ],
      "from": "oncology_sbml_ontah2019_dynamic_analysis_of_a_tumor_treatment_biomd0000000877_model.summary"
    },
    {
      "to": [
        "visualisation.oncology_sbml_ontah2019_dynamic_analysis_of_a_tumor_treatment_biomd0000000877_model_species_labels"
      ],
      "from": "oncology_sbml_ontah2019_dynamic_analysis_of_a_tumor_treatment_biomd0000000877_model.species_labels"
    }
  ],
  "runtime": {
    "duration": 10,
    "initial_inputs": {},
    "communication_step": 1
  },
  "description": "This is a mathematical model describing the treatment of tumors using oncolytic virus and chemotherapy. The model is comprised of nonlinear ordinary differential equations describing the interactions.",
  "schema_version": "2.0"
}

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