BiosimulantBiosimulant
Docs
Search labs...
Sign inGet Started

Chen2011/1 - bone marrow invasion absolute model Lab

About lab

The paper describes a model of tumor invasion to bone marrow. Created by COPASI 4.26 (Build 213) This model is described in the article: Modeling invasion of metastasizing cancer cells to bone marrow.

Runtime

Duration10
Comms Step1

Runs

Total0
Completed0
Failed0

Metadata

Packagechen2011-1-bone-marrow-invasion-absolute-model-lab
Created2026-05-16
Updated2026-05-16
biomodels_ebicuratedfaithfuloncologyphysiologysbmlsystemsbiologytumor-growthvisualisation

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_healthy_bone_marrow",
        "label": "Healthy Bone Marrow",
        "units": "native SBML value",
        "default": 0.6,
        "maps_to": "oncology_sbml_chen2011_1_bone_marrow_invasion_absolute_model_biomd0000000793_model.initial_healthy_bone_marrow",
        "description": "Initial Healthy Bone Marrow. Sets the initial value of bundled SBML symbol `H`."
      },
      {
        "name": "initial_tumor_burden",
        "label": "Tumor Burden",
        "units": "native SBML value",
        "default": 0.0001,
        "maps_to": "oncology_sbml_chen2011_1_bone_marrow_invasion_absolute_model_biomd0000000793_model.initial_tumor_burden",
        "description": "Initial Tumor Burden. Sets the initial value of bundled SBML symbol `T`."
      }
    ],
    "outputs": [
      {
        "name": "healthy_bone_marrow",
        "maps_to": "oncology_sbml_chen2011_1_bone_marrow_invasion_absolute_model_biomd0000000793_model.healthy_bone_marrow",
        "description": "Healthy Bone Marrow observable. Maps to SBML symbol `H`."
      },
      {
        "name": "tumor_burden",
        "maps_to": "oncology_sbml_chen2011_1_bone_marrow_invasion_absolute_model_biomd0000000793_model.tumor_burden",
        "description": "Tumor Burden observable. Maps to SBML symbol `T`."
      },
      {
        "name": "state",
        "maps_to": "oncology_sbml_chen2011_1_bone_marrow_invasion_absolute_model_biomd0000000793_model.state",
        "description": "Full raw SBML observable record for reproducibility and downstream visualisation."
      },
      {
        "name": "summary",
        "maps_to": "oncology_sbml_chen2011_1_bone_marrow_invasion_absolute_model_biomd0000000793_model.summary",
        "description": "Change and peak summary across the simulated SBML observables."
      },
      {
        "name": "species_labels",
        "maps_to": "oncology_sbml_chen2011_1_bone_marrow_invasion_absolute_model_biomd0000000793_model.species_labels",
        "description": "Mapping from selected raw SBML observable symbols to display labels."
      }
    ]
  },
  "tags": [
    "biomodels_ebi",
    "curated",
    "faithful",
    "oncology",
    "physiology",
    "sbml",
    "systemsbiology",
    "tumor-growth"
  ],
  "title": "Chen2011/1 - bone marrow invasion absolute model Lab",
  "models": [
    {
      "path": "owned/models/oncology_sbml_chen2011_1_bone_marrow_invasion_absolute_model_biomd0000000793_model",
      "alias": "oncology_sbml_chen2011_1_bone_marrow_invasion_absolute_model_biomd0000000793_model",
      "provenance": {
        "owned_path": "owned/models/oncology_sbml_chen2011_1_bone_marrow_invasion_absolute_model_biomd0000000793_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.oncology_sbml_chen2011_1_bone_marrow_invasion_absolute_model_biomd0000000793_model_state"
      ],
      "from": "oncology_sbml_chen2011_1_bone_marrow_invasion_absolute_model_biomd0000000793_model.state"
    },
    {
      "to": [
        "visualisation.oncology_sbml_chen2011_1_bone_marrow_invasion_absolute_model_biomd0000000793_model_summary"
      ],
      "from": "oncology_sbml_chen2011_1_bone_marrow_invasion_absolute_model_biomd0000000793_model.summary"
    },
    {
      "to": [
        "visualisation.oncology_sbml_chen2011_1_bone_marrow_invasion_absolute_model_biomd0000000793_model_species_labels"
      ],
      "from": "oncology_sbml_chen2011_1_bone_marrow_invasion_absolute_model_biomd0000000793_model.species_labels"
    }
  ],
  "runtime": {
    "duration": 10,
    "initial_inputs": {},
    "communication_step": 1
  },
  "description": "The paper describes a model of tumor invasion to bone marrow. Created by COPASI 4.26 (Build 213) This model is described in the article: Modeling invasion of metastasizing cancer cells to bone marrow.",
  "schema_version": "2.0"
}

Sign in to start your own run. Public-lab history stays visible here.

Select a run from History to view its results.