About lab
The paper describes a model of tumor invasion to bone marrow. Created by COPASI 4.26 (Build 213) This model is described in the article: Modeling invasion of metastasizing cancer cells to bone marrow.
Runtime
Duration10
Comms Step1
Runs
Total0
Completed0
Failed0
Metadata
Packagechen2011-1-bone-marrow-invasion-absolute-model-lab
Created2026-05-16
Updated2026-05-16
biomodels_ebicuratedfaithfuloncologyphysiologysbmlsystemsbiologytumor-growthvisualisation
Manifest
{
"io": {
"inputs": [
{
"name": "initial_healthy_bone_marrow",
"label": "Healthy Bone Marrow",
"units": "native SBML value",
"default": 0.6,
"maps_to": "oncology_sbml_chen2011_1_bone_marrow_invasion_absolute_model_biomd0000000793_model.initial_healthy_bone_marrow",
"description": "Initial Healthy Bone Marrow. Sets the initial value of bundled SBML symbol `H`."
},
{
"name": "initial_tumor_burden",
"label": "Tumor Burden",
"units": "native SBML value",
"default": 0.0001,
"maps_to": "oncology_sbml_chen2011_1_bone_marrow_invasion_absolute_model_biomd0000000793_model.initial_tumor_burden",
"description": "Initial Tumor Burden. Sets the initial value of bundled SBML symbol `T`."
}
],
"outputs": [
{
"name": "healthy_bone_marrow",
"maps_to": "oncology_sbml_chen2011_1_bone_marrow_invasion_absolute_model_biomd0000000793_model.healthy_bone_marrow",
"description": "Healthy Bone Marrow observable. Maps to SBML symbol `H`."
},
{
"name": "tumor_burden",
"maps_to": "oncology_sbml_chen2011_1_bone_marrow_invasion_absolute_model_biomd0000000793_model.tumor_burden",
"description": "Tumor Burden observable. Maps to SBML symbol `T`."
},
{
"name": "state",
"maps_to": "oncology_sbml_chen2011_1_bone_marrow_invasion_absolute_model_biomd0000000793_model.state",
"description": "Full raw SBML observable record for reproducibility and downstream visualisation."
},
{
"name": "summary",
"maps_to": "oncology_sbml_chen2011_1_bone_marrow_invasion_absolute_model_biomd0000000793_model.summary",
"description": "Change and peak summary across the simulated SBML observables."
},
{
"name": "species_labels",
"maps_to": "oncology_sbml_chen2011_1_bone_marrow_invasion_absolute_model_biomd0000000793_model.species_labels",
"description": "Mapping from selected raw SBML observable symbols to display labels."
}
]
},
"tags": [
"biomodels_ebi",
"curated",
"faithful",
"oncology",
"physiology",
"sbml",
"systemsbiology",
"tumor-growth"
],
"title": "Chen2011/1 - bone marrow invasion absolute model Lab",
"models": [
{
"path": "owned/models/oncology_sbml_chen2011_1_bone_marrow_invasion_absolute_model_biomd0000000793_model",
"alias": "oncology_sbml_chen2011_1_bone_marrow_invasion_absolute_model_biomd0000000793_model",
"provenance": {
"owned_path": "owned/models/oncology_sbml_chen2011_1_bone_marrow_invasion_absolute_model_biomd0000000793_model"
}
},
{
"path": "owned/models/visualisation",
"alias": "visualisation",
"provenance": {
"owned_path": "owned/models/visualisation"
}
}
],
"wiring": [
{
"to": [
"visualisation.oncology_sbml_chen2011_1_bone_marrow_invasion_absolute_model_biomd0000000793_model_state"
],
"from": "oncology_sbml_chen2011_1_bone_marrow_invasion_absolute_model_biomd0000000793_model.state"
},
{
"to": [
"visualisation.oncology_sbml_chen2011_1_bone_marrow_invasion_absolute_model_biomd0000000793_model_summary"
],
"from": "oncology_sbml_chen2011_1_bone_marrow_invasion_absolute_model_biomd0000000793_model.summary"
},
{
"to": [
"visualisation.oncology_sbml_chen2011_1_bone_marrow_invasion_absolute_model_biomd0000000793_model_species_labels"
],
"from": "oncology_sbml_chen2011_1_bone_marrow_invasion_absolute_model_biomd0000000793_model.species_labels"
}
],
"runtime": {
"duration": 10,
"initial_inputs": {},
"communication_step": 1
},
"description": "The paper describes a model of tumor invasion to bone marrow. Created by COPASI 4.26 (Build 213) This model is described in the article: Modeling invasion of metastasizing cancer cells to bone marrow.",
"schema_version": "2.0"
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