About lab
This model relates to figure 5 in <a href = 'http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12779455'>Bhalla US, Iyengar R. It can be used to explore systemsbiology bhalla2001 mapk mkp1 oscillation model9071773985 dynamics and compare simulation behavior across conditions.
Runtime
Duration1
Comms Step0.1
Runs
Total0
Completed0
Failed0
Metadata
Packagebhalla2001-mapk-mkp1-oscillation-lab
Created2026-05-17
Updated2026-05-17
signalingsystemsbiologysbmlbiomodels_ebifaithfulcuratedvisualisation
Manifest
{
"io": {
"inputs": [
{
"name": "initial_mapk_slash_mkp_minus_1_minus_gene",
"label": "Initial MAPK Slash Mkp Minus 1 Minus Gene",
"maps_to": "systemsbiology_sbml_bhalla2001_mapk_mkp1_oscillation_model9071773985_model.initial_mapk_slash_mkp_minus_1_minus_gene",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `MAPK_slash_MKP_minus_1_minus_gene`."
},
{
"name": "initial_pla2_slash_apc",
"label": "Initial Pla2 Slash Apc",
"maps_to": "systemsbiology_sbml_bhalla2001_mapk_mkp1_oscillation_model9071773985_model.initial_pla2_slash_apc",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `PLA2_slash_APC`."
},
{
"name": "initial_model_state_dag",
"label": "Initial Model State Dag",
"maps_to": "systemsbiology_sbml_bhalla2001_mapk_mkp1_oscillation_model9071773985_model.initial_model_state_dag",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `DAG`."
},
{
"name": "initial_model_state_aa",
"label": "Initial Model State Aa",
"maps_to": "systemsbiology_sbml_bhalla2001_mapk_mkp1_oscillation_model9071773985_model.initial_model_state_aa",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `AA`."
},
{
"name": "initial_temp_minus_pip2",
"label": "Initial Temp Minus Pip2",
"maps_to": "systemsbiology_sbml_bhalla2001_mapk_mkp1_oscillation_model9071773985_model.initial_temp_minus_pip2",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `temp_minus_PIP2`."
},
{
"name": "initial_mapk_slash_mapk",
"label": "Initial MAPK Slash MAPK",
"maps_to": "systemsbiology_sbml_bhalla2001_mapk_mkp1_oscillation_model9071773985_model.initial_mapk_slash_mapk",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `MAPK_slash_MAPK`."
}
],
"outputs": [
{
"name": "state",
"maps_to": "systemsbiology_sbml_bhalla2001_mapk_mkp1_oscillation_model9071773985_model.state"
},
{
"name": "summary",
"maps_to": "systemsbiology_sbml_bhalla2001_mapk_mkp1_oscillation_model9071773985_model.summary"
},
{
"name": "species_labels",
"maps_to": "systemsbiology_sbml_bhalla2001_mapk_mkp1_oscillation_model9071773985_model.species_labels"
},
{
"name": "mapk_slash_mkp_minus_1_minus_gene",
"maps_to": "systemsbiology_sbml_bhalla2001_mapk_mkp1_oscillation_model9071773985_model.mapk_slash_mkp_minus_1_minus_gene"
},
{
"name": "pla2_slash_apc",
"maps_to": "systemsbiology_sbml_bhalla2001_mapk_mkp1_oscillation_model9071773985_model.pla2_slash_apc"
},
{
"name": "dag",
"maps_to": "systemsbiology_sbml_bhalla2001_mapk_mkp1_oscillation_model9071773985_model.dag"
},
{
"name": "model_state_aa",
"maps_to": "systemsbiology_sbml_bhalla2001_mapk_mkp1_oscillation_model9071773985_model.model_state_aa"
},
{
"name": "temp_minus_pip2",
"maps_to": "systemsbiology_sbml_bhalla2001_mapk_mkp1_oscillation_model9071773985_model.temp_minus_pip2"
},
{
"name": "mapk_slash_mapk",
"maps_to": "systemsbiology_sbml_bhalla2001_mapk_mkp1_oscillation_model9071773985_model.mapk_slash_mapk"
}
]
},
"tags": [
"signaling",
"systemsbiology",
"sbml",
"biomodels_ebi",
"faithful",
"curated"
],
"title": "Bhalla2001 Mapk Mkp1 Oscillation Lab",
"models": [
{
"path": "owned/models/systemsbiology_sbml_bhalla2001_mapk_mkp1_oscillation_model9071773985_model",
"alias": "systemsbiology_sbml_bhalla2001_mapk_mkp1_oscillation_model9071773985_model",
"provenance": {
"owned_path": "owned/models/systemsbiology_sbml_bhalla2001_mapk_mkp1_oscillation_model9071773985_model"
}
},
{
"path": "owned/models/visualisation",
"alias": "visualisation",
"provenance": {
"owned_path": "owned/models/visualisation"
}
}
],
"wiring": [
{
"to": [
"visualisation.systemsbiology_sbml_bhalla2001_mapk_mkp1_oscillation_model9071773985_model_state"
],
"from": "systemsbiology_sbml_bhalla2001_mapk_mkp1_oscillation_model9071773985_model.state"
},
{
"to": [
"visualisation.systemsbiology_sbml_bhalla2001_mapk_mkp1_oscillation_model9071773985_model_summary"
],
"from": "systemsbiology_sbml_bhalla2001_mapk_mkp1_oscillation_model9071773985_model.summary"
},
{
"to": [
"visualisation.systemsbiology_sbml_bhalla2001_mapk_mkp1_oscillation_model9071773985_model_species_labels"
],
"from": "systemsbiology_sbml_bhalla2001_mapk_mkp1_oscillation_model9071773985_model.species_labels"
}
],
"runtime": {
"duration": 1,
"initial_inputs": {},
"communication_step": 0.1
},
"description": "This model relates to figure 5 in <a href = 'http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12779455'>Bhalla US, Iyengar R. It can be used to explore systemsbiology bhalla2001 mapk mkp1 oscillation model9071773985 dynamics and compare simulation behavior across conditions.",
"schema_version": "2.0"
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