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Yanagihara1980 - Rabbit Sinoatrial Node Pacemaker Cell Lab

About lab

Source-faithful physiology lab for Yanagihara 1980. Public controls and outputs are mapped to real source symbols for electrophysiology.

Runtime

Duration0.01
Comms Step0.01
Settle Steps1

Runs

Total0
Completed0
Failed0

Metadata

Packageyanagihara1980-rabbit-sinoatrial-node-pacemaker-cell-lab
Created2026-05-23
Updated2026-05-23
physiologycellmlphysiomefaithfulvisualisationother

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_membrane_voltage",
        "label": "Initial Membrane Voltage",
        "maps_to": "physiology_cellml_yanagihara_1980_yanagihara1980_model.initial_membrane_voltage",
        "description": "Initial value for Membrane Voltage. Maps to source symbol `V`. Units: millivolt. Naming evidence: source symbol, component, or units provide a direct public name.",
        "accepted_units": [
          "millivolt"
        ]
      },
      {
        "name": "initial_calcium_d_gate",
        "label": "Initial Calcium D Gate",
        "maps_to": "physiology_cellml_yanagihara_1980_yanagihara1980_model.initial_calcium_d_gate",
        "description": "Initial value for Calcium D Gate. Maps to source symbol `d`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name.",
        "accepted_units": [
          "dimensionless"
        ]
      }
    ],
    "outputs": [
      {
        "name": "state",
        "label": "Selected Source State",
        "maps_to": "physiology_cellml_yanagihara_1980_yanagihara1980_model.state"
      },
      {
        "name": "summary",
        "label": "Simulation Summary",
        "maps_to": "physiology_cellml_yanagihara_1980_yanagihara1980_model.summary"
      },
      {
        "name": "trajectory",
        "label": "Source Trajectory",
        "maps_to": "physiology_cellml_yanagihara_1980_yanagihara1980_model.trajectory"
      },
      {
        "name": "variable_labels",
        "label": "Observable Labels",
        "maps_to": "physiology_cellml_yanagihara_1980_yanagihara1980_model.variable_labels"
      },
      {
        "name": "membrane_voltage",
        "label": "Membrane Voltage",
        "maps_to": "physiology_cellml_yanagihara_1980_yanagihara1980_model.membrane_voltage",
        "description": "Membrane Voltage. Maps to source symbol `V`. Units: millivolt. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "calcium_current",
        "label": "Calcium Current",
        "maps_to": "physiology_cellml_yanagihara_1980_yanagihara1980_model.calcium_current",
        "description": "Calcium Current. Maps to source symbol `i_s`. Units: microA_per_cm2. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "sodium_current",
        "label": "Sodium Current",
        "maps_to": "physiology_cellml_yanagihara_1980_yanagihara1980_model.sodium_current",
        "description": "Sodium Current. Maps to source symbol `i_Na`. Units: microA_per_cm2. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "potassium_current",
        "label": "Potassium Current",
        "maps_to": "physiology_cellml_yanagihara_1980_yanagihara1980_model.potassium_current",
        "description": "Potassium Current. Maps to source symbol `i_K`. Units: microA_per_cm2. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "calcium_d_gate",
        "label": "Calcium D Gate",
        "maps_to": "physiology_cellml_yanagihara_1980_yanagihara1980_model.calcium_d_gate",
        "description": "Calcium D Gate. Maps to source symbol `d`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "calcium_f_gate",
        "label": "Calcium F Gate",
        "maps_to": "physiology_cellml_yanagihara_1980_yanagihara1980_model.calcium_f_gate",
        "description": "Calcium F Gate. Maps to source symbol `f`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
      }
    ]
  },
  "title": "Yanagihara1980 - Rabbit Sinoatrial Node Pacemaker Cell Lab",
  "models": [
    {
      "path": "owned/models/physiology_cellml_yanagihara_1980_yanagihara1980_model",
      "alias": "physiology_cellml_yanagihara_1980_yanagihara1980_model",
      "parameters": {
        "model_path": "data/yanagihara_model_1980.cellml",
        "integration_step": 0.01
      },
      "provenance": {
        "owned_path": "owned/models/physiology_cellml_yanagihara_1980_yanagihara1980_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.physiology_cellml_yanagihara_1980_yanagihara1980_model_state"
      ],
      "from": "physiology_cellml_yanagihara_1980_yanagihara1980_model.state"
    },
    {
      "to": [
        "visualisation.physiology_cellml_yanagihara_1980_yanagihara1980_model_summary"
      ],
      "from": "physiology_cellml_yanagihara_1980_yanagihara1980_model.summary"
    },
    {
      "to": [
        "visualisation.physiology_cellml_yanagihara_1980_yanagihara1980_model_trajectory"
      ],
      "from": "physiology_cellml_yanagihara_1980_yanagihara1980_model.trajectory"
    },
    {
      "to": [
        "visualisation.physiology_cellml_yanagihara_1980_yanagihara1980_model_variable_labels"
      ],
      "from": "physiology_cellml_yanagihara_1980_yanagihara1980_model.variable_labels"
    }
  ],
  "runtime": {
    "duration": 0.01,
    "settle_steps": 1,
    "initial_inputs": {},
    "communication_step": 0.01
  },
  "description": "Source-faithful physiology lab for Yanagihara 1980. Public controls and outputs are mapped to real source symbols for electrophysiology.",
  "schema_version": "2.0"
}

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