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Proctor2008 P53 Mdm2 Circuit P53 Stablisation By P14arf Lab

About lab

Proctor2008 - p53/Mdm2 circuit - p53 stabilisation by p14ARF This model is described in the article: Explaining oscillations and variability in the p53-Mdm2 system. It can be used to explore systemsbiology proctor2008 p53 mdm2 circuit p53 dynamics and compare simulation behavior across conditions.

Runtime

Duration1
Comms Step0.1

Runs

Total0
Completed0
Failed0

Metadata

Packageproctor2008-p53-mdm2-circuit-p53-stablisation-by-p14arf-lab
Created2026-05-17
Updated2026-05-17
systemsbiologysbmlbiomodels_ebifaithfulcuratedvisualisation

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_mdm2m_rn_adeg",
        "label": "Initial Mdm2m Rn Adeg",
        "maps_to": "systemsbiology_sbml_proctor2008_p53_mdm2_circuit_p53_stablisation_by_biomd0000000189_model.initial_mdm2m_rn_adeg",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `Mdm2mRNAdeg`."
      },
      {
        "name": "initial_mdm2m_rn_asyn",
        "label": "Initial Mdm2m Rn Asyn",
        "maps_to": "systemsbiology_sbml_proctor2008_p53_mdm2_circuit_p53_stablisation_by_biomd0000000189_model.initial_mdm2m_rn_asyn",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `Mdm2mRNAsyn`."
      },
      {
        "name": "initial_mdm2_mrna",
        "label": "Initial Mdm2 MRNA",
        "maps_to": "systemsbiology_sbml_proctor2008_p53_mdm2_circuit_p53_stablisation_by_biomd0000000189_model.initial_mdm2_mrna",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `Mdm2_mRNA`."
      },
      {
        "name": "initial_mdm2_p53",
        "label": "Initial Mdm2 P53",
        "maps_to": "systemsbiology_sbml_proctor2008_p53_mdm2_circuit_p53_stablisation_by_biomd0000000189_model.initial_mdm2_p53",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `Mdm2_p53`."
      },
      {
        "name": "initial_model_state_p53",
        "label": "Initial Model State P53",
        "maps_to": "systemsbiology_sbml_proctor2008_p53_mdm2_circuit_p53_stablisation_by_biomd0000000189_model.initial_model_state_p53",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `p53`."
      },
      {
        "name": "initial_mdm2",
        "label": "Initial Mdm2",
        "maps_to": "systemsbiology_sbml_proctor2008_p53_mdm2_circuit_p53_stablisation_by_biomd0000000189_model.initial_mdm2",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `Mdm2`."
      }
    ],
    "outputs": [
      {
        "name": "state",
        "maps_to": "systemsbiology_sbml_proctor2008_p53_mdm2_circuit_p53_stablisation_by_biomd0000000189_model.state"
      },
      {
        "name": "summary",
        "maps_to": "systemsbiology_sbml_proctor2008_p53_mdm2_circuit_p53_stablisation_by_biomd0000000189_model.summary"
      },
      {
        "name": "species_labels",
        "maps_to": "systemsbiology_sbml_proctor2008_p53_mdm2_circuit_p53_stablisation_by_biomd0000000189_model.species_labels"
      },
      {
        "name": "mdm2m_rn_adeg",
        "maps_to": "systemsbiology_sbml_proctor2008_p53_mdm2_circuit_p53_stablisation_by_biomd0000000189_model.mdm2m_rn_adeg"
      },
      {
        "name": "mdm2m_rn_asyn",
        "maps_to": "systemsbiology_sbml_proctor2008_p53_mdm2_circuit_p53_stablisation_by_biomd0000000189_model.mdm2m_rn_asyn"
      },
      {
        "name": "mdm2_mrna",
        "maps_to": "systemsbiology_sbml_proctor2008_p53_mdm2_circuit_p53_stablisation_by_biomd0000000189_model.mdm2_mrna"
      },
      {
        "name": "mdm2_p53",
        "maps_to": "systemsbiology_sbml_proctor2008_p53_mdm2_circuit_p53_stablisation_by_biomd0000000189_model.mdm2_p53"
      },
      {
        "name": "p53",
        "maps_to": "systemsbiology_sbml_proctor2008_p53_mdm2_circuit_p53_stablisation_by_biomd0000000189_model.p53"
      },
      {
        "name": "mdm2",
        "maps_to": "systemsbiology_sbml_proctor2008_p53_mdm2_circuit_p53_stablisation_by_biomd0000000189_model.mdm2"
      }
    ]
  },
  "tags": [
    "systemsbiology",
    "sbml",
    "biomodels_ebi",
    "faithful",
    "curated"
  ],
  "title": "Proctor2008 P53 Mdm2 Circuit P53 Stablisation By P14arf Lab",
  "models": [
    {
      "path": "owned/models/systemsbiology_sbml_proctor2008_p53_mdm2_circuit_p53_stablisation_by_biomd0000000189_model",
      "alias": "systemsbiology_sbml_proctor2008_p53_mdm2_circuit_p53_stablisation_by_biomd0000000189_model",
      "provenance": {
        "owned_path": "owned/models/systemsbiology_sbml_proctor2008_p53_mdm2_circuit_p53_stablisation_by_biomd0000000189_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.systemsbiology_sbml_proctor2008_p53_mdm2_circuit_p53_stablisation_by_biomd0000000189_model_state"
      ],
      "from": "systemsbiology_sbml_proctor2008_p53_mdm2_circuit_p53_stablisation_by_biomd0000000189_model.state"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_proctor2008_p53_mdm2_circuit_p53_stablisation_by_biomd0000000189_model_summary"
      ],
      "from": "systemsbiology_sbml_proctor2008_p53_mdm2_circuit_p53_stablisation_by_biomd0000000189_model.summary"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_proctor2008_p53_mdm2_circuit_p53_stablisation_by_biomd0000000189_model_species_labels"
      ],
      "from": "systemsbiology_sbml_proctor2008_p53_mdm2_circuit_p53_stablisation_by_biomd0000000189_model.species_labels"
    }
  ],
  "runtime": {
    "duration": 1,
    "initial_inputs": {},
    "communication_step": 0.1
  },
  "description": "Proctor2008 - p53/Mdm2 circuit - p53 stabilisation by p14ARF This model is described in the article: Explaining oscillations and variability in the p53-Mdm2 system. It can be used to explore systemsbiology proctor2008 p53 mdm2 circuit p53 dynamics and compare simulation behavior across conditions.",
  "schema_version": "2.0"
}

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