Ciliberto2003 - Kinetic Cyclin E Cdk2 Developmental Timer Xenopus Laevis Lab

{
  "io": {
    "inputs": [
      {
        "name": "initial_cdk2_cyc_e",
        "label": "Initial Cdk2 Cyc E",
        "maps_to": "physiology_cellml_ciliberto_petrus_tyson_sible_2003_36d_model.initial_cdk2_cyc_e",
        "description": "Initial value for Cdk2 Cyc E. Maps to source symbol `Cdk2_CycE`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name.",
        "accepted_units": [
          "dimensionless"
        ]
      },
      {
        "name": "initial_cdk2_cyc_erem",
        "label": "Initial Cdk2 Cyc Erem",
        "maps_to": "physiology_cellml_ciliberto_petrus_tyson_sible_2003_36d_model.initial_cdk2_cyc_erem",
        "description": "Initial value for Cdk2 Cyc Erem. Maps to source symbol `Cdk2_CycErem`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name.",
        "accepted_units": [
          "dimensionless"
        ]
      }
    ],
    "outputs": [
      {
        "name": "state",
        "label": "Selected Source State",
        "maps_to": "physiology_cellml_ciliberto_petrus_tyson_sible_2003_36d_model.state"
      },
      {
        "name": "summary",
        "label": "Simulation Summary",
        "maps_to": "physiology_cellml_ciliberto_petrus_tyson_sible_2003_36d_model.summary"
      },
      {
        "name": "trajectory",
        "label": "Source Trajectory",
        "maps_to": "physiology_cellml_ciliberto_petrus_tyson_sible_2003_36d_model.trajectory"
      },
      {
        "name": "variable_labels",
        "label": "Observable Labels",
        "maps_to": "physiology_cellml_ciliberto_petrus_tyson_sible_2003_36d_model.variable_labels"
      },
      {
        "name": "phi",
        "label": "Phi",
        "maps_to": "physiology_cellml_ciliberto_petrus_tyson_sible_2003_36d_model.phi",
        "description": "Phi. Maps to source symbol `phi`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "cdk2_cyc_e",
        "label": "Cdk2 Cyc E",
        "maps_to": "physiology_cellml_ciliberto_petrus_tyson_sible_2003_36d_model.cdk2_cyc_e",
        "description": "Cdk2 Cyc E. Maps to source symbol `Cdk2_CycE`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "cdk2_cyc_erem",
        "label": "Cdk2 Cyc Erem",
        "maps_to": "physiology_cellml_ciliberto_petrus_tyson_sible_2003_36d_model.cdk2_cyc_erem",
        "description": "Cdk2 Cyc Erem. Maps to source symbol `Cdk2_CycErem`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "deg_a",
        "label": "Deg A",
        "maps_to": "physiology_cellml_ciliberto_petrus_tyson_sible_2003_36d_model.deg_a",
        "description": "Deg A. Maps to source symbol `Deg_a`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "kin_a",
        "label": "Kin A",
        "maps_to": "physiology_cellml_ciliberto_petrus_tyson_sible_2003_36d_model.kin_a",
        "description": "Kin A. Maps to source symbol `Kin_a`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "pcdk2_cyc_e",
        "label": "Pcdk2 Cyc E",
        "maps_to": "physiology_cellml_ciliberto_petrus_tyson_sible_2003_36d_model.pcdk2_cyc_e",
        "description": "Pcdk2 Cyc E. Maps to source symbol `PCdk2_CycE`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
      }
    ]
  },
  "title": "Ciliberto2003 - Kinetic Cyclin E Cdk2 Developmental Timer Xenopus Laevis Lab",
  "models": [
    {
      "path": "owned/models/physiology_cellml_ciliberto_petrus_tyson_sible_2003_36d_model",
      "alias": "physiology_cellml_ciliberto_petrus_tyson_sible_2003_36d_model",
      "parameters": {
        "model_path": "data/ciliberto_petrus_tyson_sible_2003.cellml",
        "integration_step": 0.01
      },
      "provenance": {
        "owned_path": "owned/models/physiology_cellml_ciliberto_petrus_tyson_sible_2003_36d_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.physiology_cellml_ciliberto_petrus_tyson_sible_2003_36d_model_state"
      ],
      "from": "physiology_cellml_ciliberto_petrus_tyson_sible_2003_36d_model.state"
    },
    {
      "to": [
        "visualisation.physiology_cellml_ciliberto_petrus_tyson_sible_2003_36d_model_summary"
      ],
      "from": "physiology_cellml_ciliberto_petrus_tyson_sible_2003_36d_model.summary"
    },
    {
      "to": [
        "visualisation.physiology_cellml_ciliberto_petrus_tyson_sible_2003_36d_model_trajectory"
      ],
      "from": "physiology_cellml_ciliberto_petrus_tyson_sible_2003_36d_model.trajectory"
    },
    {
      "to": [
        "visualisation.physiology_cellml_ciliberto_petrus_tyson_sible_2003_36d_model_variable_labels"
      ],
      "from": "physiology_cellml_ciliberto_petrus_tyson_sible_2003_36d_model.variable_labels"
    }
  ],
  "runtime": {
    "duration": 0.01,
    "settle_steps": 1,
    "initial_inputs": {},
    "communication_step": 0.01
  },
  "description": "Source-faithful physiology lab for Ciliberto, Petrus, Tyson, Sible, 2003. Public controls and outputs are mapped to real source symbols for cell-cycle dynamics.",
  "schema_version": "2.0"
}