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Vaseghi1999_Pentose_PP_yeast Lab

About lab

Clean Biosimulant lab for systems signaling model: Vaseghi1999_Pentose_PP_yeast. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.

Runtime

Duration1
Comms Step0.1

Runs

Total0
Completed0
Failed0

Metadata

Packagevaseghi1999-pentose-pp-yeast-lab
Created2026-05-16
Updated2026-05-16
signalingsystemssystems-biologysbmlfaithfulbiomodels_ebicellular-signalingvisualisation

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_fructose_6_phosphate",
        "label": "Initial Fructose 6 Phosphate",
        "maps_to": "signaling_sbml_vaseghi1999_pentose_pp_yeast_model1004070001_model.initial_fructose_6_phosphate",
        "description": "Initial level of Fructose 6 Phosphate. Maps to SBML symbol `C_F6P`; exposed as a traceable initial-condition perturbation."
      },
      {
        "name": "initial_glucose_6_phosphate",
        "label": "Initial Glucose 6 Phosphate",
        "maps_to": "signaling_sbml_vaseghi1999_pentose_pp_yeast_model1004070001_model.initial_glucose_6_phosphate",
        "description": "Initial level of Glucose 6 Phosphate. Maps to SBML symbol `C_G6P`; exposed as a traceable initial-condition perturbation."
      },
      {
        "name": "initial_glyceraldehyde_3_phosphate",
        "label": "Initial Glyceraldehyde 3 Phosphate",
        "maps_to": "signaling_sbml_vaseghi1999_pentose_pp_yeast_model1004070001_model.initial_glyceraldehyde_3_phosphate",
        "description": "Initial level of Glyceraldehyde 3 Phosphate. Maps to SBML symbol `C_GAP`; exposed as a traceable initial-condition perturbation."
      }
    ],
    "outputs": [
      {
        "name": "glucose_6_phosphate",
        "label": "Glucose 6 Phosphate",
        "maps_to": "signaling_sbml_vaseghi1999_pentose_pp_yeast_model1004070001_model.glucose_6_phosphate",
        "description": "Glucose 6 Phosphate. Maps to SBML symbol `C_G6P` and is emitted in native SBML units."
      },
      {
        "name": "source_6_phosphogluconate",
        "label": "6 Phosphogluconate",
        "maps_to": "signaling_sbml_vaseghi1999_pentose_pp_yeast_model1004070001_model.source_6_phosphogluconate",
        "description": "6 Phosphogluconate. Maps to SBML symbol `C_6PG` and is emitted in native SBML units."
      },
      {
        "name": "ribulose_5_phosphate",
        "label": "Ribulose 5 Phosphate",
        "maps_to": "signaling_sbml_vaseghi1999_pentose_pp_yeast_model1004070001_model.ribulose_5_phosphate",
        "description": "Ribulose 5 Phosphate. Maps to SBML symbol `C_Ru5P` and is emitted in native SBML units."
      },
      {
        "name": "state",
        "label": "Observable state",
        "maps_to": "signaling_sbml_vaseghi1999_pentose_pp_yeast_model1004070001_model.state"
      },
      {
        "name": "summary",
        "label": "Simulation summary",
        "maps_to": "signaling_sbml_vaseghi1999_pentose_pp_yeast_model1004070001_model.summary"
      },
      {
        "name": "species_labels",
        "label": "Observable labels",
        "maps_to": "signaling_sbml_vaseghi1999_pentose_pp_yeast_model1004070001_model.species_labels"
      }
    ]
  },
  "tags": [
    "signaling",
    "systems",
    "systems-biology",
    "sbml",
    "faithful",
    "biomodels_ebi",
    "cellular-signaling"
  ],
  "title": "Vaseghi1999_Pentose_PP_yeast Lab",
  "models": [
    {
      "path": "owned/models/signaling_sbml_vaseghi1999_pentose_pp_yeast_model1004070001_model",
      "alias": "signaling_sbml_vaseghi1999_pentose_pp_yeast_model1004070001_model",
      "provenance": {
        "owned_path": "owned/models/signaling_sbml_vaseghi1999_pentose_pp_yeast_model1004070001_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.signaling_sbml_vaseghi1999_pentose_pp_yeast_model1004070001_model_state"
      ],
      "from": "signaling_sbml_vaseghi1999_pentose_pp_yeast_model1004070001_model.state"
    },
    {
      "to": [
        "visualisation.signaling_sbml_vaseghi1999_pentose_pp_yeast_model1004070001_model_summary"
      ],
      "from": "signaling_sbml_vaseghi1999_pentose_pp_yeast_model1004070001_model.summary"
    },
    {
      "to": [
        "visualisation.signaling_sbml_vaseghi1999_pentose_pp_yeast_model1004070001_model_species_labels"
      ],
      "from": "signaling_sbml_vaseghi1999_pentose_pp_yeast_model1004070001_model.species_labels"
    }
  ],
  "runtime": {
    "duration": 1,
    "initial_inputs": {},
    "communication_step": 0.1
  },
  "description": "Clean Biosimulant lab for systems signaling model: Vaseghi1999_Pentose_PP_yeast. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.",
  "schema_version": "2.0"
}

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