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Bhalla2004_PKA_2003 Lab

About lab

Clean Biosimulant lab for systems signaling model: Bhalla2004_PKA_2003. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.

Runtime

Duration1
Comms Step0.1

Runs

Total0
Completed0
Failed0

Metadata

Packagebhalla2004-pka-2003-lab
Created2026-05-16
Updated2026-05-16
signalingsystemssystems-biologysbmlfaithfulbiomodels_ebicamp-pkagpcrneurosciencephysiologyvisualisation

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_ac_amp",
        "label": "Initial AC AMP",
        "maps_to": "signaling_sbml_bhalla2004_pka_2003_model9079740062_model.initial_ac_amp",
        "description": "Initial level of AC AMP. Maps to SBML symbol `AC_slash_AMP`; exposed as a traceable initial-condition perturbation."
      },
      {
        "name": "initial_ac_atp",
        "label": "Initial AC ATP",
        "maps_to": "signaling_sbml_bhalla2004_pka_2003_model9079740062_model.initial_ac_atp",
        "description": "Initial level of AC ATP. Maps to SBML symbol `AC_slash_ATP`; exposed as a traceable initial-condition perturbation."
      },
      {
        "name": "initial_gs_ligand",
        "label": "Initial Gs ligand",
        "maps_to": "signaling_sbml_bhalla2004_pka_2003_model9079740062_model.initial_gs_ligand",
        "description": "Initial level of Gs ligand. Maps to SBML symbol `Gs_slash_L`; exposed as a traceable initial-condition perturbation."
      }
    ],
    "outputs": [
      {
        "name": "pka_c_amp_dot_r2c2",
        "label": "PKA C AMP Dot R2C2",
        "maps_to": "signaling_sbml_bhalla2004_pka_2003_model9079740062_model.pka_c_amp_dot_r2c2",
        "description": "PKA C AMP Dot R2C2. Maps to SBML symbol `PKA_slash_cAMP_dot_R2C2` and is emitted in native SBML units."
      },
      {
        "name": "pka_camp2_dot_r2c2",
        "label": "PKA CAMP2 Dot R2C2",
        "maps_to": "signaling_sbml_bhalla2004_pka_2003_model9079740062_model.pka_camp2_dot_r2c2",
        "description": "PKA CAMP2 Dot R2C2. Maps to SBML symbol `PKA_slash_cAMP2_dot_R2C2` and is emitted in native SBML units."
      },
      {
        "name": "pka_camp3_dot_r2c2",
        "label": "PKA CAMP3 Dot R2C2",
        "maps_to": "signaling_sbml_bhalla2004_pka_2003_model9079740062_model.pka_camp3_dot_r2c2",
        "description": "PKA CAMP3 Dot R2C2. Maps to SBML symbol `PKA_slash_cAMP3_dot_R2C2` and is emitted in native SBML units."
      },
      {
        "name": "state",
        "label": "Observable state",
        "maps_to": "signaling_sbml_bhalla2004_pka_2003_model9079740062_model.state"
      },
      {
        "name": "summary",
        "label": "Simulation summary",
        "maps_to": "signaling_sbml_bhalla2004_pka_2003_model9079740062_model.summary"
      },
      {
        "name": "species_labels",
        "label": "Observable labels",
        "maps_to": "signaling_sbml_bhalla2004_pka_2003_model9079740062_model.species_labels"
      }
    ]
  },
  "tags": [
    "signaling",
    "systems",
    "systems-biology",
    "sbml",
    "faithful",
    "biomodels_ebi",
    "camp-pka",
    "gpcr",
    "neuroscience",
    "physiology"
  ],
  "title": "Bhalla2004_PKA_2003 Lab",
  "models": [
    {
      "path": "owned/models/signaling_sbml_bhalla2004_pka_2003_model9079740062_model",
      "alias": "signaling_sbml_bhalla2004_pka_2003_model9079740062_model",
      "provenance": {
        "owned_path": "owned/models/signaling_sbml_bhalla2004_pka_2003_model9079740062_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.signaling_sbml_bhalla2004_pka_2003_model9079740062_model_state"
      ],
      "from": "signaling_sbml_bhalla2004_pka_2003_model9079740062_model.state"
    },
    {
      "to": [
        "visualisation.signaling_sbml_bhalla2004_pka_2003_model9079740062_model_summary"
      ],
      "from": "signaling_sbml_bhalla2004_pka_2003_model9079740062_model.summary"
    },
    {
      "to": [
        "visualisation.signaling_sbml_bhalla2004_pka_2003_model9079740062_model_species_labels"
      ],
      "from": "signaling_sbml_bhalla2004_pka_2003_model9079740062_model.species_labels"
    }
  ],
  "runtime": {
    "duration": 1,
    "initial_inputs": {},
    "communication_step": 0.1
  },
  "description": "Clean Biosimulant lab for systems signaling model: Bhalla2004_PKA_2003. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.",
  "schema_version": "2.0"
}

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