About lab
Clean Biosimulant lab for systems signaling model: Bhalla2004_PKA_2003. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.
Runtime
Duration1
Comms Step0.1
Runs
Total0
Completed0
Failed0
Metadata
Packagebhalla2004-pka-2003-lab
Created2026-05-16
Updated2026-05-16
signalingsystemssystems-biologysbmlfaithfulbiomodels_ebicamp-pkagpcrneurosciencephysiologyvisualisation
Manifest
{
"io": {
"inputs": [
{
"name": "initial_ac_amp",
"label": "Initial AC AMP",
"maps_to": "signaling_sbml_bhalla2004_pka_2003_model9079740062_model.initial_ac_amp",
"description": "Initial level of AC AMP. Maps to SBML symbol `AC_slash_AMP`; exposed as a traceable initial-condition perturbation."
},
{
"name": "initial_ac_atp",
"label": "Initial AC ATP",
"maps_to": "signaling_sbml_bhalla2004_pka_2003_model9079740062_model.initial_ac_atp",
"description": "Initial level of AC ATP. Maps to SBML symbol `AC_slash_ATP`; exposed as a traceable initial-condition perturbation."
},
{
"name": "initial_gs_ligand",
"label": "Initial Gs ligand",
"maps_to": "signaling_sbml_bhalla2004_pka_2003_model9079740062_model.initial_gs_ligand",
"description": "Initial level of Gs ligand. Maps to SBML symbol `Gs_slash_L`; exposed as a traceable initial-condition perturbation."
}
],
"outputs": [
{
"name": "pka_c_amp_dot_r2c2",
"label": "PKA C AMP Dot R2C2",
"maps_to": "signaling_sbml_bhalla2004_pka_2003_model9079740062_model.pka_c_amp_dot_r2c2",
"description": "PKA C AMP Dot R2C2. Maps to SBML symbol `PKA_slash_cAMP_dot_R2C2` and is emitted in native SBML units."
},
{
"name": "pka_camp2_dot_r2c2",
"label": "PKA CAMP2 Dot R2C2",
"maps_to": "signaling_sbml_bhalla2004_pka_2003_model9079740062_model.pka_camp2_dot_r2c2",
"description": "PKA CAMP2 Dot R2C2. Maps to SBML symbol `PKA_slash_cAMP2_dot_R2C2` and is emitted in native SBML units."
},
{
"name": "pka_camp3_dot_r2c2",
"label": "PKA CAMP3 Dot R2C2",
"maps_to": "signaling_sbml_bhalla2004_pka_2003_model9079740062_model.pka_camp3_dot_r2c2",
"description": "PKA CAMP3 Dot R2C2. Maps to SBML symbol `PKA_slash_cAMP3_dot_R2C2` and is emitted in native SBML units."
},
{
"name": "state",
"label": "Observable state",
"maps_to": "signaling_sbml_bhalla2004_pka_2003_model9079740062_model.state"
},
{
"name": "summary",
"label": "Simulation summary",
"maps_to": "signaling_sbml_bhalla2004_pka_2003_model9079740062_model.summary"
},
{
"name": "species_labels",
"label": "Observable labels",
"maps_to": "signaling_sbml_bhalla2004_pka_2003_model9079740062_model.species_labels"
}
]
},
"tags": [
"signaling",
"systems",
"systems-biology",
"sbml",
"faithful",
"biomodels_ebi",
"camp-pka",
"gpcr",
"neuroscience",
"physiology"
],
"title": "Bhalla2004_PKA_2003 Lab",
"models": [
{
"path": "owned/models/signaling_sbml_bhalla2004_pka_2003_model9079740062_model",
"alias": "signaling_sbml_bhalla2004_pka_2003_model9079740062_model",
"provenance": {
"owned_path": "owned/models/signaling_sbml_bhalla2004_pka_2003_model9079740062_model"
}
},
{
"path": "owned/models/visualisation",
"alias": "visualisation",
"provenance": {
"owned_path": "owned/models/visualisation"
}
}
],
"wiring": [
{
"to": [
"visualisation.signaling_sbml_bhalla2004_pka_2003_model9079740062_model_state"
],
"from": "signaling_sbml_bhalla2004_pka_2003_model9079740062_model.state"
},
{
"to": [
"visualisation.signaling_sbml_bhalla2004_pka_2003_model9079740062_model_summary"
],
"from": "signaling_sbml_bhalla2004_pka_2003_model9079740062_model.summary"
},
{
"to": [
"visualisation.signaling_sbml_bhalla2004_pka_2003_model9079740062_model_species_labels"
],
"from": "signaling_sbml_bhalla2004_pka_2003_model9079740062_model.species_labels"
}
],
"runtime": {
"duration": 1,
"initial_inputs": {},
"communication_step": 0.1
},
"description": "Clean Biosimulant lab for systems signaling model: Bhalla2004_PKA_2003. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.",
"schema_version": "2.0"
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