Messiha2013 - combined glycolysis and pentose phosphate pathway model Lab

{
  "io": {
    "inputs": [
      {
        "name": "initial_adp",
        "units": "native SBML value",
        "default": 1.29,
        "maps_to": "metabolism_sbml_messiha2013_combined_glycolysis_and_pentose_phos_biomd0000000503_model.initial_adp",
        "description": "Initial condition for adp. Maps to bundled SBML symbol `ADP`. Applied before the Tellurium simulation starts; this does not change kinetic parameters or equations. Default from bundled SBML initial value."
      },
      {
        "name": "initial_atp",
        "units": "native SBML value",
        "default": 4.29,
        "maps_to": "metabolism_sbml_messiha2013_combined_glycolysis_and_pentose_phos_biomd0000000503_model.initial_atp",
        "description": "Initial condition for atp. Maps to bundled SBML symbol `ATP`. Applied before the Tellurium simulation starts; this does not change kinetic parameters or equations. Default from bundled SBML initial value."
      },
      {
        "name": "initial_glycolysis_state_3",
        "units": "native SBML value",
        "default": 0.178140579850657,
        "maps_to": "metabolism_sbml_messiha2013_combined_glycolysis_and_pentose_phos_biomd0000000503_model.initial_glycolysis_state_3",
        "description": "Initial condition for glycolysis state 3. Maps to bundled SBML symbol `AcAld`. Applied before the Tellurium simulation starts; this does not change kinetic parameters or equations. Default from bundled SBML initial value."
      },
      {
        "name": "initial_glycolysis_state_4",
        "units": "native SBML value",
        "default": 0.000736873499865602,
        "maps_to": "metabolism_sbml_messiha2013_combined_glycolysis_and_pentose_phos_biomd0000000503_model.initial_glycolysis_state_4",
        "description": "Initial condition for glycolysis state 4. Maps to bundled SBML symbol `BPG`. Applied before the Tellurium simulation starts; this does not change kinetic parameters or equations. Default from bundled SBML initial value."
      },
      {
        "name": "initial_glycolysis_state_5",
        "units": "native SBML value",
        "default": 1.1613768527467,
        "maps_to": "metabolism_sbml_messiha2013_combined_glycolysis_and_pentose_phos_biomd0000000503_model.initial_glycolysis_state_5",
        "description": "Initial condition for glycolysis state 5. Maps to bundled SBML symbol `DHAP`. Applied before the Tellurium simulation starts; this does not change kinetic parameters or equations. Default from bundled SBML initial value."
      }
    ],
    "outputs": [
      {
        "name": "adp",
        "maps_to": "metabolism_sbml_messiha2013_combined_glycolysis_and_pentose_phos_biomd0000000503_model.adp"
      },
      {
        "name": "atp",
        "maps_to": "metabolism_sbml_messiha2013_combined_glycolysis_and_pentose_phos_biomd0000000503_model.atp"
      },
      {
        "name": "glycolysis_state_3",
        "maps_to": "metabolism_sbml_messiha2013_combined_glycolysis_and_pentose_phos_biomd0000000503_model.glycolysis_state_3"
      },
      {
        "name": "glycolysis_state_4",
        "maps_to": "metabolism_sbml_messiha2013_combined_glycolysis_and_pentose_phos_biomd0000000503_model.glycolysis_state_4"
      },
      {
        "name": "glycolysis_state_5",
        "maps_to": "metabolism_sbml_messiha2013_combined_glycolysis_and_pentose_phos_biomd0000000503_model.glycolysis_state_5"
      },
      {
        "name": "observable_values",
        "maps_to": "metabolism_sbml_messiha2013_combined_glycolysis_and_pentose_phos_biomd0000000503_model.observable_values"
      },
      {
        "name": "run_summary",
        "maps_to": "metabolism_sbml_messiha2013_combined_glycolysis_and_pentose_phos_biomd0000000503_model.run_summary"
      },
      {
        "name": "observable_labels",
        "maps_to": "metabolism_sbml_messiha2013_combined_glycolysis_and_pentose_phos_biomd0000000503_model.observable_labels"
      }
    ]
  },
  "title": "Messiha2013 - combined glycolysis and pentose phosphate pathway model Lab",
  "models": [
    {
      "path": "owned/models/metabolism_sbml_messiha2013_combined_glycolysis_and_pentose_phos_biomd0000000503_model",
      "alias": "metabolism_sbml_messiha2013_combined_glycolysis_and_pentose_phos_biomd0000000503_model",
      "parameters": {
        "model_path": "data/BIOMD0000000503.xml",
        "integration_step": 0.1
      },
      "provenance": {
        "owned_path": "owned/models/metabolism_sbml_messiha2013_combined_glycolysis_and_pentose_phos_biomd0000000503_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.metabolism_sbml_messiha2013_combined_glycolysis_and_pentose_phos_biomd0000000503_model_observable_values"
      ],
      "from": "metabolism_sbml_messiha2013_combined_glycolysis_and_pentose_phos_biomd0000000503_model.observable_values"
    },
    {
      "to": [
        "visualisation.metabolism_sbml_messiha2013_combined_glycolysis_and_pentose_phos_biomd0000000503_model_run_summary"
      ],
      "from": "metabolism_sbml_messiha2013_combined_glycolysis_and_pentose_phos_biomd0000000503_model.run_summary"
    },
    {
      "to": [
        "visualisation.metabolism_sbml_messiha2013_combined_glycolysis_and_pentose_phos_biomd0000000503_model_observable_labels"
      ],
      "from": "metabolism_sbml_messiha2013_combined_glycolysis_and_pentose_phos_biomd0000000503_model.observable_labels"
    }
  ],
  "runtime": {
    "duration": 10,
    "initial_inputs": {},
    "communication_step": 1
  },
  "description": "Messiha2013 - combined glycolysis and pentose phosphate pathway model BIOMD0000000502 and MODEL1303260018 are combined to examine the response to oxidative stress. It can be used to explore metabolic flux dynamics and compare pathway behavior across conditions.",
  "schema_version": "2.0"
}