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Muller2008 - Simplified MAPK activation Dynamics (Model B) Lab

About lab

Clean Biosimulant lab for MAPK/ERK receptor signaling. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.

Runtime

Duration1
Comms Step0.1

Runs

Total0
Completed0
Failed0

Metadata

Packagemuller2008-simplified-mapk-activation-dynamics-model-b-lab
Created2026-05-16
Updated2026-05-16
signalingsystemssystems-biologysbmlfaithfulbiomodels_ebimapkvisualisation

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_source_defined_g1_state",
        "label": "Initial source-defined G1 state",
        "maps_to": "signaling_sbml_muller2008_simplified_mapk_activation_dynamics_m_biomd0000000664_model.initial_source_defined_g1_state",
        "description": "Initial level of source-defined G1 state. Maps to SBML symbol `g1_0`; exposed as a traceable initial-condition perturbation."
      },
      {
        "name": "initial_source_defined_g2_state",
        "label": "Initial source-defined G2 state",
        "maps_to": "signaling_sbml_muller2008_simplified_mapk_activation_dynamics_m_biomd0000000664_model.initial_source_defined_g2_state",
        "description": "Initial level of source-defined G2 state. Maps to SBML symbol `g2_0`; exposed as a traceable initial-condition perturbation."
      }
    ],
    "outputs": [
      {
        "name": "mapk",
        "label": "MAPK",
        "maps_to": "signaling_sbml_muller2008_simplified_mapk_activation_dynamics_m_biomd0000000664_model.mapk",
        "description": "MAPK. Maps to SBML symbol `MAPK` and is emitted in native SBML units."
      },
      {
        "name": "c_raf_inactive",
        "label": "C RAF Inactive",
        "maps_to": "signaling_sbml_muller2008_simplified_mapk_activation_dynamics_m_biomd0000000664_model.c_raf_inactive",
        "description": "C RAF Inactive. Maps to SBML symbol `C_Raf_inactive` and is emitted in native SBML units."
      },
      {
        "name": "source_defined_fgfr_state",
        "label": "source-defined FGFR state",
        "maps_to": "signaling_sbml_muller2008_simplified_mapk_activation_dynamics_m_biomd0000000664_model.source_defined_fgfr_state",
        "description": "source-defined FGFR state. Maps to SBML symbol `FGFR` and is emitted in native SBML units."
      },
      {
        "name": "state",
        "label": "Observable state",
        "maps_to": "signaling_sbml_muller2008_simplified_mapk_activation_dynamics_m_biomd0000000664_model.state"
      },
      {
        "name": "summary",
        "label": "Simulation summary",
        "maps_to": "signaling_sbml_muller2008_simplified_mapk_activation_dynamics_m_biomd0000000664_model.summary"
      },
      {
        "name": "species_labels",
        "label": "Observable labels",
        "maps_to": "signaling_sbml_muller2008_simplified_mapk_activation_dynamics_m_biomd0000000664_model.species_labels"
      }
    ]
  },
  "tags": [
    "signaling",
    "systems",
    "systems-biology",
    "sbml",
    "faithful",
    "biomodels_ebi",
    "mapk"
  ],
  "title": "Muller2008 - Simplified MAPK activation Dynamics (Model B) Lab",
  "models": [
    {
      "path": "owned/models/signaling_sbml_muller2008_simplified_mapk_activation_dynamics_m_biomd0000000664_model",
      "alias": "signaling_sbml_muller2008_simplified_mapk_activation_dynamics_m_biomd0000000664_model",
      "provenance": {
        "owned_path": "owned/models/signaling_sbml_muller2008_simplified_mapk_activation_dynamics_m_biomd0000000664_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.signaling_sbml_muller2008_simplified_mapk_activation_dynamics_m_biomd0000000664_model_state"
      ],
      "from": "signaling_sbml_muller2008_simplified_mapk_activation_dynamics_m_biomd0000000664_model.state"
    },
    {
      "to": [
        "visualisation.signaling_sbml_muller2008_simplified_mapk_activation_dynamics_m_biomd0000000664_model_summary"
      ],
      "from": "signaling_sbml_muller2008_simplified_mapk_activation_dynamics_m_biomd0000000664_model.summary"
    },
    {
      "to": [
        "visualisation.signaling_sbml_muller2008_simplified_mapk_activation_dynamics_m_biomd0000000664_model_species_labels"
      ],
      "from": "signaling_sbml_muller2008_simplified_mapk_activation_dynamics_m_biomd0000000664_model.species_labels"
    }
  ],
  "runtime": {
    "duration": 1,
    "initial_inputs": {},
    "communication_step": 0.1
  },
  "description": "Clean Biosimulant lab for MAPK/ERK receptor signaling. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.",
  "schema_version": "2.0"
}

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