About lab
The model reproduces the time profile of cYm and cTm under light-dark cycles as depicted in Fig 4 and Fig 5 respectively. 12 hour light-dark cycles are accomplished using a simple algorithm in the eve.
Runtime
Duration1
Comms Step0.1
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Metadata
Packagezeilinger2006-prr7-prr9light-y-lab
Created2026-05-17
Updated2026-05-17
systemsbiologysbmlbiomodels_ebifaithfulcuratedvisualisation
Manifest
{
"io": {
"inputs": [
{
"name": "initial_c_yc",
"label": "Initial C Yc",
"maps_to": "systemsbiology_sbml_zeilinger2006_prr7_prr9light_y_biomd0000000096_model.initial_c_yc",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `cYc`."
},
{
"name": "initial_c_yn",
"label": "Initial C Yn",
"maps_to": "systemsbiology_sbml_zeilinger2006_prr7_prr9light_y_biomd0000000096_model.initial_c_yn",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `cYn`."
},
{
"name": "initial_c_xn",
"label": "Initial C Xn",
"maps_to": "systemsbiology_sbml_zeilinger2006_prr7_prr9light_y_biomd0000000096_model.initial_c_xn",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `cXn`."
},
{
"name": "initial_c_tc",
"label": "Initial C Tc",
"maps_to": "systemsbiology_sbml_zeilinger2006_prr7_prr9light_y_biomd0000000096_model.initial_c_tc",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `cTc`."
},
{
"name": "initial_c_tn",
"label": "Initial C Tn",
"maps_to": "systemsbiology_sbml_zeilinger2006_prr7_prr9light_y_biomd0000000096_model.initial_c_tn",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `cTn`."
},
{
"name": "initial_c_tm",
"label": "Initial C Tm",
"maps_to": "systemsbiology_sbml_zeilinger2006_prr7_prr9light_y_biomd0000000096_model.initial_c_tm",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `cTm`."
}
],
"outputs": [
{
"name": "state",
"maps_to": "systemsbiology_sbml_zeilinger2006_prr7_prr9light_y_biomd0000000096_model.state"
},
{
"name": "summary",
"maps_to": "systemsbiology_sbml_zeilinger2006_prr7_prr9light_y_biomd0000000096_model.summary"
},
{
"name": "species_labels",
"maps_to": "systemsbiology_sbml_zeilinger2006_prr7_prr9light_y_biomd0000000096_model.species_labels"
},
{
"name": "c_yc",
"maps_to": "systemsbiology_sbml_zeilinger2006_prr7_prr9light_y_biomd0000000096_model.c_yc"
},
{
"name": "c_yn",
"maps_to": "systemsbiology_sbml_zeilinger2006_prr7_prr9light_y_biomd0000000096_model.c_yn"
},
{
"name": "c_xn",
"maps_to": "systemsbiology_sbml_zeilinger2006_prr7_prr9light_y_biomd0000000096_model.c_xn"
},
{
"name": "c_tc",
"maps_to": "systemsbiology_sbml_zeilinger2006_prr7_prr9light_y_biomd0000000096_model.c_tc"
},
{
"name": "c_tn",
"maps_to": "systemsbiology_sbml_zeilinger2006_prr7_prr9light_y_biomd0000000096_model.c_tn"
},
{
"name": "c_tm",
"maps_to": "systemsbiology_sbml_zeilinger2006_prr7_prr9light_y_biomd0000000096_model.c_tm"
}
]
},
"tags": [
"systemsbiology",
"sbml",
"biomodels_ebi",
"faithful",
"curated"
],
"title": "Zeilinger2006 Prr7 Prr9light Y Lab",
"models": [
{
"path": "owned/models/systemsbiology_sbml_zeilinger2006_prr7_prr9light_y_biomd0000000096_model",
"alias": "systemsbiology_sbml_zeilinger2006_prr7_prr9light_y_biomd0000000096_model",
"provenance": {
"owned_path": "owned/models/systemsbiology_sbml_zeilinger2006_prr7_prr9light_y_biomd0000000096_model"
}
},
{
"path": "owned/models/visualisation",
"alias": "visualisation",
"provenance": {
"owned_path": "owned/models/visualisation"
}
}
],
"wiring": [
{
"to": [
"visualisation.systemsbiology_sbml_zeilinger2006_prr7_prr9light_y_biomd0000000096_model_state"
],
"from": "systemsbiology_sbml_zeilinger2006_prr7_prr9light_y_biomd0000000096_model.state"
},
{
"to": [
"visualisation.systemsbiology_sbml_zeilinger2006_prr7_prr9light_y_biomd0000000096_model_summary"
],
"from": "systemsbiology_sbml_zeilinger2006_prr7_prr9light_y_biomd0000000096_model.summary"
},
{
"to": [
"visualisation.systemsbiology_sbml_zeilinger2006_prr7_prr9light_y_biomd0000000096_model_species_labels"
],
"from": "systemsbiology_sbml_zeilinger2006_prr7_prr9light_y_biomd0000000096_model.species_labels"
}
],
"runtime": {
"duration": 1,
"initial_inputs": {},
"communication_step": 0.1
},
"description": "The model reproduces the time profile of cYm and cTm under light-dark cycles as depicted in Fig 4 and Fig 5 respectively. 12 hour light-dark cycles are accomplished using a simple algorithm in the eve.",
"schema_version": "2.0"
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