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Zeilinger2006 Prr7 Prr9light Y Lab

About lab

The model reproduces the time profile of cYm and cTm under light-dark cycles as depicted in Fig 4 and Fig 5 respectively. 12 hour light-dark cycles are accomplished using a simple algorithm in the eve.

Runtime

Duration1
Comms Step0.1

Runs

Total0
Completed0
Failed0

Metadata

Packagezeilinger2006-prr7-prr9light-y-lab
Created2026-05-17
Updated2026-05-17
systemsbiologysbmlbiomodels_ebifaithfulcuratedvisualisation

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_c_yc",
        "label": "Initial C Yc",
        "maps_to": "systemsbiology_sbml_zeilinger2006_prr7_prr9light_y_biomd0000000096_model.initial_c_yc",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `cYc`."
      },
      {
        "name": "initial_c_yn",
        "label": "Initial C Yn",
        "maps_to": "systemsbiology_sbml_zeilinger2006_prr7_prr9light_y_biomd0000000096_model.initial_c_yn",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `cYn`."
      },
      {
        "name": "initial_c_xn",
        "label": "Initial C Xn",
        "maps_to": "systemsbiology_sbml_zeilinger2006_prr7_prr9light_y_biomd0000000096_model.initial_c_xn",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `cXn`."
      },
      {
        "name": "initial_c_tc",
        "label": "Initial C Tc",
        "maps_to": "systemsbiology_sbml_zeilinger2006_prr7_prr9light_y_biomd0000000096_model.initial_c_tc",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `cTc`."
      },
      {
        "name": "initial_c_tn",
        "label": "Initial C Tn",
        "maps_to": "systemsbiology_sbml_zeilinger2006_prr7_prr9light_y_biomd0000000096_model.initial_c_tn",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `cTn`."
      },
      {
        "name": "initial_c_tm",
        "label": "Initial C Tm",
        "maps_to": "systemsbiology_sbml_zeilinger2006_prr7_prr9light_y_biomd0000000096_model.initial_c_tm",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `cTm`."
      }
    ],
    "outputs": [
      {
        "name": "state",
        "maps_to": "systemsbiology_sbml_zeilinger2006_prr7_prr9light_y_biomd0000000096_model.state"
      },
      {
        "name": "summary",
        "maps_to": "systemsbiology_sbml_zeilinger2006_prr7_prr9light_y_biomd0000000096_model.summary"
      },
      {
        "name": "species_labels",
        "maps_to": "systemsbiology_sbml_zeilinger2006_prr7_prr9light_y_biomd0000000096_model.species_labels"
      },
      {
        "name": "c_yc",
        "maps_to": "systemsbiology_sbml_zeilinger2006_prr7_prr9light_y_biomd0000000096_model.c_yc"
      },
      {
        "name": "c_yn",
        "maps_to": "systemsbiology_sbml_zeilinger2006_prr7_prr9light_y_biomd0000000096_model.c_yn"
      },
      {
        "name": "c_xn",
        "maps_to": "systemsbiology_sbml_zeilinger2006_prr7_prr9light_y_biomd0000000096_model.c_xn"
      },
      {
        "name": "c_tc",
        "maps_to": "systemsbiology_sbml_zeilinger2006_prr7_prr9light_y_biomd0000000096_model.c_tc"
      },
      {
        "name": "c_tn",
        "maps_to": "systemsbiology_sbml_zeilinger2006_prr7_prr9light_y_biomd0000000096_model.c_tn"
      },
      {
        "name": "c_tm",
        "maps_to": "systemsbiology_sbml_zeilinger2006_prr7_prr9light_y_biomd0000000096_model.c_tm"
      }
    ]
  },
  "tags": [
    "systemsbiology",
    "sbml",
    "biomodels_ebi",
    "faithful",
    "curated"
  ],
  "title": "Zeilinger2006 Prr7 Prr9light Y Lab",
  "models": [
    {
      "path": "owned/models/systemsbiology_sbml_zeilinger2006_prr7_prr9light_y_biomd0000000096_model",
      "alias": "systemsbiology_sbml_zeilinger2006_prr7_prr9light_y_biomd0000000096_model",
      "provenance": {
        "owned_path": "owned/models/systemsbiology_sbml_zeilinger2006_prr7_prr9light_y_biomd0000000096_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.systemsbiology_sbml_zeilinger2006_prr7_prr9light_y_biomd0000000096_model_state"
      ],
      "from": "systemsbiology_sbml_zeilinger2006_prr7_prr9light_y_biomd0000000096_model.state"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_zeilinger2006_prr7_prr9light_y_biomd0000000096_model_summary"
      ],
      "from": "systemsbiology_sbml_zeilinger2006_prr7_prr9light_y_biomd0000000096_model.summary"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_zeilinger2006_prr7_prr9light_y_biomd0000000096_model_species_labels"
      ],
      "from": "systemsbiology_sbml_zeilinger2006_prr7_prr9light_y_biomd0000000096_model.species_labels"
    }
  ],
  "runtime": {
    "duration": 1,
    "initial_inputs": {},
    "communication_step": 0.1
  },
  "description": "The model reproduces the time profile of cYm and cTm under light-dark cycles as depicted in Fig 4 and Fig 5 respectively. 12 hour light-dark cycles are accomplished using a simple algorithm in the eve.",
  "schema_version": "2.0"
}

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