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Decaluwe2016 Circadian Clock Lab

About lab

DeCaluwé2016 - Circadian Clock This model is described in the article: A Compact Model for the Complex Plant Circadian Clock. De Caluwé J, Xiao Q, Hermans C, Verbruggen N, Leloup JC, Gonze D.

Runtime

Duration1
Comms Step0.1

Runs

Total0
Completed0
Failed0

Metadata

Packagedecaluwe2016-circadian-clock-lab
Created2026-05-17
Updated2026-05-17
systemsbiologysbmlbiomodels_ebifaithfulcuratedvisualisation

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_prr9_prr7_protein",
        "label": "Initial Prr9 Prr7 Protein",
        "maps_to": "systemsbiology_sbml_decaluwe2016_circadian_clock_biomd0000000631_model.initial_prr9_prr7_protein",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `P97_p`."
      },
      {
        "name": "initial_prr9_prr7_mrna",
        "label": "Initial Prr9 Prr7 MRNA",
        "maps_to": "systemsbiology_sbml_decaluwe2016_circadian_clock_biomd0000000631_model.initial_prr9_prr7_mrna",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `P97_m`."
      },
      {
        "name": "initial_prr5_toc1_protein",
        "label": "Initial Prr5 Toc1 Protein",
        "maps_to": "systemsbiology_sbml_decaluwe2016_circadian_clock_biomd0000000631_model.initial_prr5_toc1_protein",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `P51_p`."
      },
      {
        "name": "initial_prr5_toc1_mrna",
        "label": "Initial Prr5 Toc1 MRNA",
        "maps_to": "systemsbiology_sbml_decaluwe2016_circadian_clock_biomd0000000631_model.initial_prr5_toc1_mrna",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `P51_m`."
      },
      {
        "name": "initial_pif4_pif5_protein",
        "label": "Initial Pif4 Pif5 Protein",
        "maps_to": "systemsbiology_sbml_decaluwe2016_circadian_clock_biomd0000000631_model.initial_pif4_pif5_protein",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `PIF_p`."
      },
      {
        "name": "initial_pif4_pif5_mrna",
        "label": "Initial Pif4 Pif5 MRNA",
        "maps_to": "systemsbiology_sbml_decaluwe2016_circadian_clock_biomd0000000631_model.initial_pif4_pif5_mrna",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `PIF_m`."
      }
    ],
    "outputs": [
      {
        "name": "state",
        "maps_to": "systemsbiology_sbml_decaluwe2016_circadian_clock_biomd0000000631_model.state"
      },
      {
        "name": "summary",
        "maps_to": "systemsbiology_sbml_decaluwe2016_circadian_clock_biomd0000000631_model.summary"
      },
      {
        "name": "species_labels",
        "maps_to": "systemsbiology_sbml_decaluwe2016_circadian_clock_biomd0000000631_model.species_labels"
      },
      {
        "name": "prr9_prr7_protein",
        "maps_to": "systemsbiology_sbml_decaluwe2016_circadian_clock_biomd0000000631_model.prr9_prr7_protein"
      },
      {
        "name": "prr9_prr7_mrna",
        "maps_to": "systemsbiology_sbml_decaluwe2016_circadian_clock_biomd0000000631_model.prr9_prr7_mrna"
      },
      {
        "name": "prr5_toc1_protein",
        "maps_to": "systemsbiology_sbml_decaluwe2016_circadian_clock_biomd0000000631_model.prr5_toc1_protein"
      },
      {
        "name": "prr5_toc1_mrna",
        "maps_to": "systemsbiology_sbml_decaluwe2016_circadian_clock_biomd0000000631_model.prr5_toc1_mrna"
      },
      {
        "name": "pif4_pif5_protein",
        "maps_to": "systemsbiology_sbml_decaluwe2016_circadian_clock_biomd0000000631_model.pif4_pif5_protein"
      },
      {
        "name": "pif4_pif5_mrna",
        "maps_to": "systemsbiology_sbml_decaluwe2016_circadian_clock_biomd0000000631_model.pif4_pif5_mrna"
      }
    ]
  },
  "tags": [
    "systemsbiology",
    "sbml",
    "biomodels_ebi",
    "faithful",
    "curated"
  ],
  "title": "Decaluwe2016 Circadian Clock Lab",
  "models": [
    {
      "path": "owned/models/systemsbiology_sbml_decaluwe2016_circadian_clock_biomd0000000631_model",
      "alias": "systemsbiology_sbml_decaluwe2016_circadian_clock_biomd0000000631_model",
      "provenance": {
        "owned_path": "owned/models/systemsbiology_sbml_decaluwe2016_circadian_clock_biomd0000000631_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.systemsbiology_sbml_decaluwe2016_circadian_clock_biomd0000000631_model_state"
      ],
      "from": "systemsbiology_sbml_decaluwe2016_circadian_clock_biomd0000000631_model.state"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_decaluwe2016_circadian_clock_biomd0000000631_model_summary"
      ],
      "from": "systemsbiology_sbml_decaluwe2016_circadian_clock_biomd0000000631_model.summary"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_decaluwe2016_circadian_clock_biomd0000000631_model_species_labels"
      ],
      "from": "systemsbiology_sbml_decaluwe2016_circadian_clock_biomd0000000631_model.species_labels"
    }
  ],
  "runtime": {
    "duration": 1,
    "initial_inputs": {},
    "communication_step": 0.1
  },
  "description": "DeCaluwé2016 - Circadian Clock This model is described in the article: A Compact Model for the Complex Plant Circadian Clock. De Caluwé J, Xiao Q, Hermans C, Verbruggen N, Leloup JC, Gonze D.",
  "schema_version": "2.0"
}

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