BiosimulantBiosimulant
Docs
Search labs...
Sign inGet Started

Machado2014 - Curcumin production pathway in Escherichia coli Lab

About lab

Clean Biosimulant lab for systems signaling model: Machado2014 - Curcumin production pathway in Escherichia coli. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.

Runtime

Duration1
Comms Step0.1

Runs

Total0
Completed0
Failed0

Metadata

Packagemachado2014-curcumin-production-pathway-in-escherichia-coli-lab
Created2026-05-16
Updated2026-05-16
signalingsystemssystems-biologysbmlfaithfulbiomodels_ebicellular-signalingvisualisation

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_camp_level",
        "label": "cAMP",
        "maps_to": "signaling_sbml_machado2014_curcumin_production_pathway_in_esche_biomd0000000565_model.initial_camp_level",
        "description": "cAMP source parameter. Maps to SBML symbol `camp` and preserves the bundled default."
      },
      {
        "name": "initial_extracellular_glucose",
        "label": "Initial Extracellular Glucose",
        "maps_to": "signaling_sbml_machado2014_curcumin_production_pathway_in_esche_biomd0000000565_model.initial_extracellular_glucose",
        "description": "Initial level of Extracellular Glucose. Maps to SBML symbol `cglcex`; exposed as a traceable initial-condition perturbation."
      },
      {
        "name": "initial_glucose_1_phosphate",
        "label": "Initial Glucose 1 Phosphate",
        "maps_to": "signaling_sbml_machado2014_curcumin_production_pathway_in_esche_biomd0000000565_model.initial_glucose_1_phosphate",
        "description": "Initial level of Glucose 1 Phosphate. Maps to SBML symbol `cg1p`; exposed as a traceable initial-condition perturbation."
      }
    ],
    "outputs": [
      {
        "name": "phosphoenol_pyruvate",
        "label": "Phosphoenol Pyruvate",
        "maps_to": "signaling_sbml_machado2014_curcumin_production_pathway_in_esche_biomd0000000565_model.phosphoenol_pyruvate",
        "description": "Phosphoenol Pyruvate. Maps to SBML symbol `cpep` and is emitted in native SBML units."
      },
      {
        "name": "glucose_6_phosphate",
        "label": "Glucose 6 Phosphate",
        "maps_to": "signaling_sbml_machado2014_curcumin_production_pathway_in_esche_biomd0000000565_model.glucose_6_phosphate",
        "description": "Glucose 6 Phosphate. Maps to SBML symbol `cg6p` and is emitted in native SBML units."
      },
      {
        "name": "fructose_6_phosphate",
        "label": "Fructose 6 Phosphate",
        "maps_to": "signaling_sbml_machado2014_curcumin_production_pathway_in_esche_biomd0000000565_model.fructose_6_phosphate",
        "description": "Fructose 6 Phosphate. Maps to SBML symbol `cf6p` and is emitted in native SBML units."
      },
      {
        "name": "state",
        "label": "Observable state",
        "maps_to": "signaling_sbml_machado2014_curcumin_production_pathway_in_esche_biomd0000000565_model.state"
      },
      {
        "name": "summary",
        "label": "Simulation summary",
        "maps_to": "signaling_sbml_machado2014_curcumin_production_pathway_in_esche_biomd0000000565_model.summary"
      },
      {
        "name": "species_labels",
        "label": "Observable labels",
        "maps_to": "signaling_sbml_machado2014_curcumin_production_pathway_in_esche_biomd0000000565_model.species_labels"
      }
    ]
  },
  "tags": [
    "signaling",
    "systems",
    "systems-biology",
    "sbml",
    "faithful",
    "biomodels_ebi",
    "cellular-signaling"
  ],
  "title": "Machado2014 - Curcumin production pathway in Escherichia coli Lab",
  "models": [
    {
      "path": "owned/models/signaling_sbml_machado2014_curcumin_production_pathway_in_esche_biomd0000000565_model",
      "alias": "signaling_sbml_machado2014_curcumin_production_pathway_in_esche_biomd0000000565_model",
      "provenance": {
        "owned_path": "owned/models/signaling_sbml_machado2014_curcumin_production_pathway_in_esche_biomd0000000565_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.signaling_sbml_machado2014_curcumin_production_pathway_in_esche_biomd0000000565_model_state"
      ],
      "from": "signaling_sbml_machado2014_curcumin_production_pathway_in_esche_biomd0000000565_model.state"
    },
    {
      "to": [
        "visualisation.signaling_sbml_machado2014_curcumin_production_pathway_in_esche_biomd0000000565_model_summary"
      ],
      "from": "signaling_sbml_machado2014_curcumin_production_pathway_in_esche_biomd0000000565_model.summary"
    },
    {
      "to": [
        "visualisation.signaling_sbml_machado2014_curcumin_production_pathway_in_esche_biomd0000000565_model_species_labels"
      ],
      "from": "signaling_sbml_machado2014_curcumin_production_pathway_in_esche_biomd0000000565_model.species_labels"
    }
  ],
  "runtime": {
    "duration": 1,
    "initial_inputs": {},
    "communication_step": 0.1
  },
  "description": "Clean Biosimulant lab for systems signaling model: Machado2014 - Curcumin production pathway in Escherichia coli. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.",
  "schema_version": "2.0"
}

Sign in to start your own run. Public-lab history stays visible here.

Select a run from History to view its results.