About lab
Clean Biosimulant lab for systems signaling model: Machado2014 - Curcumin production pathway in Escherichia coli. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.
Runtime
Duration1
Comms Step0.1
Runs
Total0
Completed0
Failed0
Metadata
Packagemachado2014-curcumin-production-pathway-in-escherichia-coli-lab
Created2026-05-16
Updated2026-05-16
signalingsystemssystems-biologysbmlfaithfulbiomodels_ebicellular-signalingvisualisation
Manifest
{
"io": {
"inputs": [
{
"name": "initial_camp_level",
"label": "cAMP",
"maps_to": "signaling_sbml_machado2014_curcumin_production_pathway_in_esche_biomd0000000565_model.initial_camp_level",
"description": "cAMP source parameter. Maps to SBML symbol `camp` and preserves the bundled default."
},
{
"name": "initial_extracellular_glucose",
"label": "Initial Extracellular Glucose",
"maps_to": "signaling_sbml_machado2014_curcumin_production_pathway_in_esche_biomd0000000565_model.initial_extracellular_glucose",
"description": "Initial level of Extracellular Glucose. Maps to SBML symbol `cglcex`; exposed as a traceable initial-condition perturbation."
},
{
"name": "initial_glucose_1_phosphate",
"label": "Initial Glucose 1 Phosphate",
"maps_to": "signaling_sbml_machado2014_curcumin_production_pathway_in_esche_biomd0000000565_model.initial_glucose_1_phosphate",
"description": "Initial level of Glucose 1 Phosphate. Maps to SBML symbol `cg1p`; exposed as a traceable initial-condition perturbation."
}
],
"outputs": [
{
"name": "phosphoenol_pyruvate",
"label": "Phosphoenol Pyruvate",
"maps_to": "signaling_sbml_machado2014_curcumin_production_pathway_in_esche_biomd0000000565_model.phosphoenol_pyruvate",
"description": "Phosphoenol Pyruvate. Maps to SBML symbol `cpep` and is emitted in native SBML units."
},
{
"name": "glucose_6_phosphate",
"label": "Glucose 6 Phosphate",
"maps_to": "signaling_sbml_machado2014_curcumin_production_pathway_in_esche_biomd0000000565_model.glucose_6_phosphate",
"description": "Glucose 6 Phosphate. Maps to SBML symbol `cg6p` and is emitted in native SBML units."
},
{
"name": "fructose_6_phosphate",
"label": "Fructose 6 Phosphate",
"maps_to": "signaling_sbml_machado2014_curcumin_production_pathway_in_esche_biomd0000000565_model.fructose_6_phosphate",
"description": "Fructose 6 Phosphate. Maps to SBML symbol `cf6p` and is emitted in native SBML units."
},
{
"name": "state",
"label": "Observable state",
"maps_to": "signaling_sbml_machado2014_curcumin_production_pathway_in_esche_biomd0000000565_model.state"
},
{
"name": "summary",
"label": "Simulation summary",
"maps_to": "signaling_sbml_machado2014_curcumin_production_pathway_in_esche_biomd0000000565_model.summary"
},
{
"name": "species_labels",
"label": "Observable labels",
"maps_to": "signaling_sbml_machado2014_curcumin_production_pathway_in_esche_biomd0000000565_model.species_labels"
}
]
},
"tags": [
"signaling",
"systems",
"systems-biology",
"sbml",
"faithful",
"biomodels_ebi",
"cellular-signaling"
],
"title": "Machado2014 - Curcumin production pathway in Escherichia coli Lab",
"models": [
{
"path": "owned/models/signaling_sbml_machado2014_curcumin_production_pathway_in_esche_biomd0000000565_model",
"alias": "signaling_sbml_machado2014_curcumin_production_pathway_in_esche_biomd0000000565_model",
"provenance": {
"owned_path": "owned/models/signaling_sbml_machado2014_curcumin_production_pathway_in_esche_biomd0000000565_model"
}
},
{
"path": "owned/models/visualisation",
"alias": "visualisation",
"provenance": {
"owned_path": "owned/models/visualisation"
}
}
],
"wiring": [
{
"to": [
"visualisation.signaling_sbml_machado2014_curcumin_production_pathway_in_esche_biomd0000000565_model_state"
],
"from": "signaling_sbml_machado2014_curcumin_production_pathway_in_esche_biomd0000000565_model.state"
},
{
"to": [
"visualisation.signaling_sbml_machado2014_curcumin_production_pathway_in_esche_biomd0000000565_model_summary"
],
"from": "signaling_sbml_machado2014_curcumin_production_pathway_in_esche_biomd0000000565_model.summary"
},
{
"to": [
"visualisation.signaling_sbml_machado2014_curcumin_production_pathway_in_esche_biomd0000000565_model_species_labels"
],
"from": "signaling_sbml_machado2014_curcumin_production_pathway_in_esche_biomd0000000565_model.species_labels"
}
],
"runtime": {
"duration": 1,
"initial_inputs": {},
"communication_step": 0.1
},
"description": "Clean Biosimulant lab for systems signaling model: Machado2014 - Curcumin production pathway in Escherichia coli. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.",
"schema_version": "2.0"
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