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Physiome d39 - Bond Graph CVS Lab

About lab

Source-faithful physiology lab for Bond graph CVS model. Public controls and outputs are mapped to real source symbols for source-model physiology.

Runtime

Duration0.01
Comms Step0.01
Settle Steps1

Runs

Total0
Completed0
Failed0

Metadata

Packagephysiome-d39-bond-graph-cvs-lab
Created2026-05-23
Updated2026-05-23
physiologycellmlphysiomefaithfulvisualisationother

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_model_state_q_a1",
        "label": "Initial Model State Q A1 (source q_A1)",
        "maps_to": "physiology_cellml_bond_graph_cvs_model_d39_model.initial_model_state_q_a1",
        "description": "Initial value for Model State Q A1 (source q_A1). Maps to source symbol `q_A1`. Units: litre. Naming evidence: source symbol is too ambiguous for a stronger public label.",
        "accepted_units": [
          "litre"
        ]
      },
      {
        "name": "initial_model_state_q_a2",
        "label": "Initial Model State Q A2 (source q_A2)",
        "maps_to": "physiology_cellml_bond_graph_cvs_model_d39_model.initial_model_state_q_a2",
        "description": "Initial value for Model State Q A2 (source q_A2). Maps to source symbol `q_A2`. Units: litre. Naming evidence: source symbol is too ambiguous for a stronger public label.",
        "accepted_units": [
          "litre"
        ]
      }
    ],
    "outputs": [
      {
        "name": "state",
        "label": "Selected Source State",
        "maps_to": "physiology_cellml_bond_graph_cvs_model_d39_model.state"
      },
      {
        "name": "summary",
        "label": "Simulation Summary",
        "maps_to": "physiology_cellml_bond_graph_cvs_model_d39_model.summary"
      },
      {
        "name": "trajectory",
        "label": "Source Trajectory",
        "maps_to": "physiology_cellml_bond_graph_cvs_model_d39_model.trajectory"
      },
      {
        "name": "variable_labels",
        "label": "Observable Labels",
        "maps_to": "physiology_cellml_bond_graph_cvs_model_d39_model.variable_labels"
      },
      {
        "name": "q_tot_heart",
        "label": "Q Tot Heart",
        "maps_to": "physiology_cellml_bond_graph_cvs_model_d39_model.q_tot_heart",
        "description": "Q Tot Heart. Maps to source symbol `q_TotHeart`. Units: litre. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "model_state_q_a1",
        "label": "Model State Q A1 (source q_A1)",
        "maps_to": "physiology_cellml_bond_graph_cvs_model_d39_model.model_state_q_a1",
        "description": "Model State Q A1 (source q_A1). Maps to source symbol `q_A1`. Units: litre. Naming evidence: source symbol is too ambiguous for a stronger public label."
      },
      {
        "name": "model_state_q_a2",
        "label": "Model State Q A2 (source q_A2)",
        "maps_to": "physiology_cellml_bond_graph_cvs_model_d39_model.model_state_q_a2",
        "description": "Model State Q A2 (source q_A2). Maps to source symbol `q_A2`. Units: litre. Naming evidence: source symbol is too ambiguous for a stronger public label."
      },
      {
        "name": "model_state_q_a3",
        "label": "Model State Q A3 (source q_A3)",
        "maps_to": "physiology_cellml_bond_graph_cvs_model_d39_model.model_state_q_a3",
        "description": "Model State Q A3 (source q_A3). Maps to source symbol `q_A3`. Units: litre. Naming evidence: source symbol is too ambiguous for a stronger public label."
      },
      {
        "name": "model_state_q_a4",
        "label": "Model State Q A4 (source q_A4)",
        "maps_to": "physiology_cellml_bond_graph_cvs_model_d39_model.model_state_q_a4",
        "description": "Model State Q A4 (source q_A4). Maps to source symbol `q_A4`. Units: litre. Naming evidence: source symbol is too ambiguous for a stronger public label."
      },
      {
        "name": "model_state_q_a5",
        "label": "Model State Q A5 (source q_A5)",
        "maps_to": "physiology_cellml_bond_graph_cvs_model_d39_model.model_state_q_a5",
        "description": "Model State Q A5 (source q_A5). Maps to source symbol `q_A5`. Units: litre. Naming evidence: source symbol is too ambiguous for a stronger public label."
      }
    ]
  },
  "title": "Physiome d39 - Bond Graph CVS Lab",
  "models": [
    {
      "path": "owned/models/physiology_cellml_bond_graph_cvs_model_d39_model",
      "alias": "physiology_cellml_bond_graph_cvs_model_d39_model",
      "parameters": {
        "model_path": "data/BG_cvs_MVP_model.cellml",
        "integration_step": 0.01
      },
      "provenance": {
        "owned_path": "owned/models/physiology_cellml_bond_graph_cvs_model_d39_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.physiology_cellml_bond_graph_cvs_model_d39_model_state"
      ],
      "from": "physiology_cellml_bond_graph_cvs_model_d39_model.state"
    },
    {
      "to": [
        "visualisation.physiology_cellml_bond_graph_cvs_model_d39_model_summary"
      ],
      "from": "physiology_cellml_bond_graph_cvs_model_d39_model.summary"
    },
    {
      "to": [
        "visualisation.physiology_cellml_bond_graph_cvs_model_d39_model_trajectory"
      ],
      "from": "physiology_cellml_bond_graph_cvs_model_d39_model.trajectory"
    },
    {
      "to": [
        "visualisation.physiology_cellml_bond_graph_cvs_model_d39_model_variable_labels"
      ],
      "from": "physiology_cellml_bond_graph_cvs_model_d39_model.variable_labels"
    }
  ],
  "runtime": {
    "duration": 0.01,
    "settle_steps": 1,
    "initial_inputs": {},
    "communication_step": 0.01
  },
  "description": "Source-faithful physiology lab for Bond graph CVS model. Public controls and outputs are mapped to real source symbols for source-model physiology.",
  "schema_version": "2.0"
}

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