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Physiome 610 - Test S Lib Omex Meta Lab

About lab

Source-faithful physiology lab for Test cellml model(s) for LibOmexMeta. Public controls and outputs are mapped to real source symbols for calcium handling.

Runtime

Duration0.01
Comms Step0.01
Settle Steps1

Runs

Total0
Completed0
Failed0

Metadata

Packagephysiome-610-test-s-lib-omex-meta-lab
Created2026-05-23
Updated2026-05-23
physiologycellmlphysiomefaithfulvisualisationother

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_intracellular_calcium",
        "label": "Initial Intracellular Calcium",
        "maps_to": "physiology_cellml_test_cellml_model_s_for_libomexmeta_610_model.initial_intracellular_calcium",
        "description": "Initial value for Intracellular Calcium. Maps to source symbol `Ca_i`. Units: mM. Naming evidence: source symbol, component, or units provide a direct public name.",
        "accepted_units": [
          "mM"
        ]
      }
    ],
    "outputs": [
      {
        "name": "state",
        "label": "Selected Source State",
        "maps_to": "physiology_cellml_test_cellml_model_s_for_libomexmeta_610_model.state"
      },
      {
        "name": "summary",
        "label": "Simulation Summary",
        "maps_to": "physiology_cellml_test_cellml_model_s_for_libomexmeta_610_model.summary"
      },
      {
        "name": "trajectory",
        "label": "Source Trajectory",
        "maps_to": "physiology_cellml_test_cellml_model_s_for_libomexmeta_610_model.trajectory"
      },
      {
        "name": "variable_labels",
        "label": "Observable Labels",
        "maps_to": "physiology_cellml_test_cellml_model_s_for_libomexmeta_610_model.variable_labels"
      },
      {
        "name": "intracellular_calcium",
        "label": "Intracellular Calcium",
        "maps_to": "physiology_cellml_test_cellml_model_s_for_libomexmeta_610_model.intracellular_calcium",
        "description": "Intracellular Calcium. Maps to source symbol `Ca_i`. Units: mM. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "ca_ion_f",
        "label": "Ca Ion F",
        "maps_to": "physiology_cellml_test_cellml_model_s_for_libomexmeta_610_model.ca_ion_f",
        "description": "Ca Ion F. Maps to source symbol `F`. Units: faradays_constant. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "ca_ion_n",
        "label": "Ca Ion N",
        "maps_to": "physiology_cellml_test_cellml_model_s_for_libomexmeta_610_model.ca_ion_n",
        "description": "Ca Ion N. Maps to source symbol `n`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "ca_ion_r",
        "label": "Ca Ion R",
        "maps_to": "physiology_cellml_test_cellml_model_s_for_libomexmeta_610_model.ca_ion_r",
        "description": "Ca Ion R. Maps to source symbol `R`. Units: gas_constant. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "ca_ion_t",
        "label": "Ca Ion T",
        "maps_to": "physiology_cellml_test_cellml_model_s_for_libomexmeta_610_model.ca_ion_t",
        "description": "Ca Ion T. Maps to source symbol `T`. Units: K. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "ca_ion_z",
        "label": "Ca Ion Z",
        "maps_to": "physiology_cellml_test_cellml_model_s_for_libomexmeta_610_model.ca_ion_z",
        "description": "Ca Ion Z. Maps to source symbol `z`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
      }
    ]
  },
  "title": "Physiome 610 - Test S Lib Omex Meta Lab",
  "models": [
    {
      "path": "owned/models/physiology_cellml_test_cellml_model_s_for_libomexmeta_610_model",
      "alias": "physiology_cellml_test_cellml_model_s_for_libomexmeta_610_model",
      "parameters": {
        "model_path": "data/nernst_eg.cellml",
        "integration_step": 0.01
      },
      "provenance": {
        "owned_path": "owned/models/physiology_cellml_test_cellml_model_s_for_libomexmeta_610_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.physiology_cellml_test_cellml_model_s_for_libomexmeta_610_model_state"
      ],
      "from": "physiology_cellml_test_cellml_model_s_for_libomexmeta_610_model.state"
    },
    {
      "to": [
        "visualisation.physiology_cellml_test_cellml_model_s_for_libomexmeta_610_model_summary"
      ],
      "from": "physiology_cellml_test_cellml_model_s_for_libomexmeta_610_model.summary"
    },
    {
      "to": [
        "visualisation.physiology_cellml_test_cellml_model_s_for_libomexmeta_610_model_trajectory"
      ],
      "from": "physiology_cellml_test_cellml_model_s_for_libomexmeta_610_model.trajectory"
    },
    {
      "to": [
        "visualisation.physiology_cellml_test_cellml_model_s_for_libomexmeta_610_model_variable_labels"
      ],
      "from": "physiology_cellml_test_cellml_model_s_for_libomexmeta_610_model.variable_labels"
    }
  ],
  "runtime": {
    "duration": 0.01,
    "settle_steps": 1,
    "initial_inputs": {},
    "communication_step": 0.01
  },
  "description": "Source-faithful physiology lab for Test cellml model(s) for LibOmexMeta. Public controls and outputs are mapped to real source symbols for calcium handling.",
  "schema_version": "2.0"
}

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