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Nguyenlk2011 Ubiquitination Dynamics In Ring1b Bmi1 System Lab

About lab

NguyenLK2011 - Ubiquitination dynamics inRing1B-Bmi1 system This theoretical model investigates thedynamics of Ring1B/Bmi1 ubiquitination to identify bistableswitch-like and oscillatory behaviour in t. It can be used to explore systemsbiology nguyenlk2011 ubiquitination dynamics in ring1b dynamics and compare simulation behavior across conditions.

Runtime

Duration1
Comms Step0.1

Runs

Total0
Completed0
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Metadata

Packagenguyenlk2011-ubiquitination-dynamics-in-ring1b-bmi1-system-lab
Created2026-05-17
Updated2026-05-17
cellcyclesystemsbiologysbmlbiomodels_ebifaithfulcuratedvisualisation

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_bmi1",
        "label": "Initial Bmi1",
        "maps_to": "systemsbiology_sbml_nguyenlk2011_ubiquitination_dynamics_in_ring1b_b_biomd0000000622_model.initial_bmi1",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `Bmi1`."
      },
      {
        "name": "initial_bmi1ubd",
        "label": "Initial Bmi1ubd",
        "maps_to": "systemsbiology_sbml_nguyenlk2011_ubiquitination_dynamics_in_ring1b_b_biomd0000000622_model.initial_bmi1ubd",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `Bmi1ubd`."
      },
      {
        "name": "initial_usp7tot",
        "label": "Initial Usp7tot",
        "maps_to": "systemsbiology_sbml_nguyenlk2011_ubiquitination_dynamics_in_ring1b_b_biomd0000000622_model.initial_usp7tot",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `USP7tot`."
      },
      {
        "name": "initial_r1_buba",
        "label": "Initial R1 Buba",
        "maps_to": "systemsbiology_sbml_nguyenlk2011_ubiquitination_dynamics_in_ring1b_b_biomd0000000622_model.initial_r1_buba",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `R1Buba`."
      },
      {
        "name": "initial_model_state_zub",
        "label": "Initial Model State Zub",
        "maps_to": "systemsbiology_sbml_nguyenlk2011_ubiquitination_dynamics_in_ring1b_b_biomd0000000622_model.initial_model_state_zub",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `Zub`."
      },
      {
        "name": "initial_r1_bubd",
        "label": "Initial R1 Bubd",
        "maps_to": "systemsbiology_sbml_nguyenlk2011_ubiquitination_dynamics_in_ring1b_b_biomd0000000622_model.initial_r1_bubd",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `R1Bubd`."
      }
    ],
    "outputs": [
      {
        "name": "state",
        "maps_to": "systemsbiology_sbml_nguyenlk2011_ubiquitination_dynamics_in_ring1b_b_biomd0000000622_model.state"
      },
      {
        "name": "summary",
        "maps_to": "systemsbiology_sbml_nguyenlk2011_ubiquitination_dynamics_in_ring1b_b_biomd0000000622_model.summary"
      },
      {
        "name": "species_labels",
        "maps_to": "systemsbiology_sbml_nguyenlk2011_ubiquitination_dynamics_in_ring1b_b_biomd0000000622_model.species_labels"
      },
      {
        "name": "bmi1",
        "maps_to": "systemsbiology_sbml_nguyenlk2011_ubiquitination_dynamics_in_ring1b_b_biomd0000000622_model.bmi1"
      },
      {
        "name": "bmi1ubd",
        "maps_to": "systemsbiology_sbml_nguyenlk2011_ubiquitination_dynamics_in_ring1b_b_biomd0000000622_model.bmi1ubd"
      },
      {
        "name": "usp7tot",
        "maps_to": "systemsbiology_sbml_nguyenlk2011_ubiquitination_dynamics_in_ring1b_b_biomd0000000622_model.usp7tot"
      },
      {
        "name": "r1_buba",
        "maps_to": "systemsbiology_sbml_nguyenlk2011_ubiquitination_dynamics_in_ring1b_b_biomd0000000622_model.r1_buba"
      },
      {
        "name": "zub",
        "maps_to": "systemsbiology_sbml_nguyenlk2011_ubiquitination_dynamics_in_ring1b_b_biomd0000000622_model.zub"
      },
      {
        "name": "r1_bubd",
        "maps_to": "systemsbiology_sbml_nguyenlk2011_ubiquitination_dynamics_in_ring1b_b_biomd0000000622_model.r1_bubd"
      }
    ]
  },
  "tags": [
    "cellcycle",
    "systemsbiology",
    "sbml",
    "biomodels_ebi",
    "faithful",
    "curated"
  ],
  "title": "Nguyenlk2011 Ubiquitination Dynamics In Ring1b Bmi1 System Lab",
  "models": [
    {
      "path": "owned/models/systemsbiology_sbml_nguyenlk2011_ubiquitination_dynamics_in_ring1b_b_biomd0000000622_model",
      "alias": "systemsbiology_sbml_nguyenlk2011_ubiquitination_dynamics_in_ring1b_b_biomd0000000622_model",
      "provenance": {
        "owned_path": "owned/models/systemsbiology_sbml_nguyenlk2011_ubiquitination_dynamics_in_ring1b_b_biomd0000000622_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.systemsbiology_sbml_nguyenlk2011_ubiquitination_dynamics_in_ring1b_b_biomd0000000622_model_state"
      ],
      "from": "systemsbiology_sbml_nguyenlk2011_ubiquitination_dynamics_in_ring1b_b_biomd0000000622_model.state"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_nguyenlk2011_ubiquitination_dynamics_in_ring1b_b_biomd0000000622_model_summary"
      ],
      "from": "systemsbiology_sbml_nguyenlk2011_ubiquitination_dynamics_in_ring1b_b_biomd0000000622_model.summary"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_nguyenlk2011_ubiquitination_dynamics_in_ring1b_b_biomd0000000622_model_species_labels"
      ],
      "from": "systemsbiology_sbml_nguyenlk2011_ubiquitination_dynamics_in_ring1b_b_biomd0000000622_model.species_labels"
    }
  ],
  "runtime": {
    "duration": 1,
    "initial_inputs": {},
    "communication_step": 0.1
  },
  "description": "NguyenLK2011 - Ubiquitination dynamics inRing1B-Bmi1 system This theoretical model investigates thedynamics of Ring1B/Bmi1 ubiquitination to identify bistableswitch-like and oscillatory behaviour in t. It can be used to explore systemsbiology nguyenlk2011 ubiquitination dynamics in ring1b dynamics and compare simulation behavior across conditions.",
  "schema_version": "2.0"
}

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